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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4372next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein (Rv0001) [Mycobacterium tuberculosis H37Rv] 507 PfamA32U 10-88 -12.000 28  PF11638.8; DNAA_LAWIP/5-67; DnaA N-terminal domain
168-386 -93.000 79  PF00308.18; DNAA_STRCO/317-535; Bacterial dnaA protein
204-507 -10.600 14  PF03969.16; ZAPE_ECOLI/4-371; AFG1-like ATPase
413-480 -29.800 51  PF08299.11; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix
2 gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta (Rv0002) [Mycobacterium tuberculosis H37Rv] 402 PfamA32U 13-129 -49.500 25  PF00712.19; DPO3B_CAUVC/1-121; DNA polymerase III beta subunit, N-terminal domain
138-260 -45.700 22  PF02767.16; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
262-399 -43.300 26  PF02768.15; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
3 gi|15607145|ref|NP_214517.1| recombination protein F (Rv0003) [Mycobacterium tuberculosis H37Rv] 385 PfamA32U 1-359 -24.100 PF13175.6; I1YS32_PREI7/1-378; AAA ATPase domain
4 gi|15607146|ref|NP_214518.1| hypothetical protein (Rv0004) [Mycobacterium tuberculosis H37Rv] 187 PfamA32U 75-162 -37.500 25  PF05258.12; Q02A53_SOLUE/3-88; Dna[CI] antecedent, DciA
5 gi|15607147|ref|NP_214519.1| DNA gyrase subunit B (Rv0005) [Mycobacterium tuberculosis H37Rv] 714 PfamA32U 80-183 -13.700 20  PF13589.6; A5G4D8_GEOUR/22-165; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
295-465 -58.700 43  PF00204.25; A9KS52_LACP7/226-396; DNA gyrase B
603-707 -28.100 11  PF16898.5; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM
641-703 -31.500 60  PF00986.21; M9X0E0_MANHA/738-800; DNA gyrase B subunit, carboxyl terminus
6 gi|15607148|ref|NP_214520.1| DNA gyrase subunit A (Rv0006) [Mycobacterium tuberculosis H37Rv] 838 PfamA32U 39-478 -62.400 19  PF00521.20; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A
7 gi|15607149|ref|NP_214521.1| hypothetical protein (Rv0007) [Mycobacterium tuberculosis H37Rv] 304 PfamA32U 186-302 -49.900 60  PF12089.8; Q0SAF2_RHOJR/351-465; Transmembrane domain of unknown function (DUF3566 topsan)
8 gi|15607150|ref|NP_214522.1| hypothetical protein (Rv0008c) [Mycobacterium tuberculosis H37Rv] 145 PfamA32U 9-145 -92.100 100  PF10814.8; CWSA_MYCTU/9-145; Cell wall synthesis protein CwsA
9 gi|15607151|ref|NP_214523.1| iron-regulated peptidyl-prolyl cis-trans isomerase A (Rv0009) [Mycobacterium tuberculosis H37Rv] 182 PfamA32U 17-169 -56.200 26  PF00160.21; Q7NG65_GLOVI/261-474; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
10 gi|15607152|ref|NP_214524.1| hypothetical protein (Rv0010c) [Mycobacterium tuberculosis H37Rv] 141 PfamA32U 3-110 -11.300 12  PF17255.2; A4VVV1_STRSY/5-138; EbsA-like protein
58-134 -19.900 18  PF10756.9; Q5YRV9_NOCFA/80-151; Bacterial PH domain
11 gi|15607153|ref|NP_214525.1| putative septation inhibitor protein (Rv0011c) [Mycobacterium tuberculosis H37Rv] 93 PfamA32U 1-93 -47.000 31  PF06781.12; D1BI18_SANKS/1-89; Cell division protein CrgA
12 gi|15607154|ref|NP_214526.1| hypothetical protein (Rv0012) [Mycobacterium tuberculosis H37Rv] 262 PfamA32U 102-255 -63.000 26  PF05949.12; F6B3E0_DESCC/87-231; Bacterial protein of unknown function (DUF881 topsan)
13 gi|57116682|ref|YP_177615.1| para-aminobenzoate synthase component II (Rv0013) [Mycobacterium tuberculosis H37Rv] 232 PfamA32U 4-189 -79.400 23  PF00117.28; GUAA_BACSU/10-192; Glutamine amidotransferase class-I
14 gi|15607156|ref|NP_214528.1| transmembrane serine/threonine-protein kinase B PKNB (protein kinase B) (STPK B) (Rv0014c) [Mycobacterium tuberculosis H37Rv] 626 PfamA32U 11-270 -52.200 22  PF00069.25; KS6A1_MOUSE/407-664; Protein kinase domain
360-422 -16.400 33  PF03793.19; A0A098MZT7_LEPIR/112-183; PASTA domain
15 gi|15607157|ref|NP_214529.1| transmembrane serine/threonine-protein kinase A PKNA (protein kinase A) (STPK A) (Rv0015c) [Mycobacterium tuberculosis H37Rv] 431 PfamA32U 12-260 -50.600 18  PF14531.6; B9QMZ2_TOXGV/253-542; Kinase-like
16 gi|15607158|ref|NP_214530.1|(removed signalp:1-30) penicillin-binding protein PbpA (Rv0016c) [Mycobacterium tuberculosis H37Rv] 461 PfamA32U 12-93 -19.300 15  PF03717.15; Q31F48_HYDCU/68-242; Penicillin-binding Protein dimerisation domain
130-454 -74.000 21  PF00905.22; YQGFA_BACSU/352-682; Penicillin binding protein transpeptidase domain
17 gi|15607159|ref|NP_214531.1|(removed signalp:1-35) cell division protein RodA (Rv0017c) [Mycobacterium tuberculosis H37Rv] 434 PfamA32U 45-410 -92.700 31  PF01098.19; SP5E_BACSU/10-366; Cell cycle protein
18 gi|15607160|ref|NP_214532.1| serine/threonine phosphatase (Rv0018c) [Mycobacterium tuberculosis H37Rv] 514 PfamA32U 30-231 -27.500 13  PF00481.21; B2AA70_PODAN/1451-1701; Protein phosphatase 2C
425-506 -10.800 17  PF12526.8; Q8JJN7_HEV/686-799; Protein of unknown function (DUF3729 topsan)
19 gi|15607161|ref|NP_214533.1| hypothetical protein (Rv0019c) [Mycobacterium tuberculosis H37Rv] 155 PfamA32U 65-155 -44.600 26  PF16697.5; E3FMY4_STIAD/31-122; Inner membrane component of T3SS, cytoplasmic domain
20 gi|15607162|ref|NP_214534.1| hypothetical protein (Rv0020c) [Mycobacterium tuberculosis H37Rv] 527 PfamA32U 8-122 -32.800 28  PF12401.8; F8JSD1_STREN/4-118; Protein of unknown function (DUF2662 topsan)
442-527 -23.200 24  PF16697.5; E3FMY4_STIAD/31-122; Inner membrane component of T3SS, cytoplasmic domain


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.