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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2171next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15675949|ref|NP_273067.1| putative acetyltransferase (NMB0001) [Neisseria meningitidis MC58] 163 CSGID 1-161 -42.400 19  IDP95422 set236a-024 [Undefined organism]
2 gi|15675950|ref|NP_273068.1|(removed signalp:1-36) hypothetical protein (NMB0002) [Neisseria meningitidis MC58] 95 CSGID 15-84 -6.240 11  IDP02689 hypothetical protein FTT0903 [Francisella tularensis subsp. tularensis SCHU S4] FTT0903 [Francisella tularensis subsp. tularensis SCHU S4]
3 gi|15675951|ref|NP_273069.1| glutamyl-tRNA synthetase (NMB0003) [Neisseria meningitidis MC58] 464 CSGID 1-464 -132.000 47  IDP90858 Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS) O31153 [Vibrio cholerae]
4 gi|15675952|ref|NP_273070.1|(removed signalp:1-37) EpiH/GdmH-related protein (NMB0004) [Neisseria meningitidis MC58] 177 CSGID 1-171 -43.400 20  IDP00507 hypothetical protein YPO2511 YPO2511 [Yersinia pestis CO92]
5 gi|15675953|ref|NP_273071.1| arsenate reductase (NMB0005) [Neisseria meningitidis MC58] 117 CSGID 1-117 -66.500 52  IDP00581 putative arsenate reductase YPO3070 [Yersinia pestis CO92]
6 gi|15675954|ref|NP_273072.1|(removed signalp:1-22) thioredoxin-related protein (NMB0006) [Neisseria meningitidis MC58] 138 CSGID 1-135 -63.000 25  IDP02519 gene: resA; thiol-disulfide oxidoreductase [Bacillus anthracis str. `Ames Ancestor`] GBAA1494 [Bacillus anthracis str. `Ames Ancestor`]
7 gi|15675955|ref|NP_273073.1| ABC transporter ATP-binding protein (NMB0007) [Neisseria meningitidis MC58] 216 CSGID 1-216 -102.000 50  IDP00547 gene: ftsE; cell division protein FtsE YPO3813 [Yersinia pestis CO92]
8 gi|15675956|ref|NP_273074.1| putative cell division protein FtsX (NMB0008) [Neisseria meningitidis MC58] 305 CSGID 7-299 -89.300 24  IDP91938 cell division ABC transporter, permease protein FtsX [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100009513 [Streptococcus pneumoniae str. Canada MDR_19A]
9 gi|15675957|ref|NP_273075.1| BolA/YrbA family protein (NMB0009) [Neisseria meningitidis MC58] 82 CSGID 2-82 -42.700 32  IDP01322 bolA protein VC2296 [Vibrio cholerae O1 biovar El Tor str. N16961]
10 gi|15675958|ref|NP_273076.1| phosphoglycerate kinase (NMB0010) [Neisseria meningitidis MC58] 403 CSGID 1-403 -113.000 57  IDP02760 gene: pgk; phosphogylcerate kinase [Francisella tularensis subsp. tularensis SCHU S4] FTT1367c [Francisella tularensis subsp. tularensis SCHU S4]
11 gi|15675959|ref|NP_273077.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (NMB0011) [Neisseria meningitidis MC58] 417 CSGID 1-416 -92.900 46  IDP00022 UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 (Enoylpyruvate transferase 2) (UDP-N-acetylglucosamine enolpyruvyl transferase 2) (EPT 2) BA_5578 [Bacillus anthracis str. Ames]
12 gi|15675960|ref|NP_273078.1| hypothetical protein (NMB0012) [Neisseria meningitidis MC58] 323 CSGID 45-314 -18.300 12  IDP95135 putative transmembrane protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002920370 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
13 gi|15675961|ref|NP_273079.1| hypothetical protein (NMB0013) [Neisseria meningitidis MC58] 149 CSGID 7-110 -6.260 10  IDP04529 gene: acrD; aminoglycoside/multidrug efflux system [Salmonella typhimurium LT2] STM2481_1_1037 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
14 gi|15675962|ref|NP_273080.1| 3-deoxy-D-manno-octulosonic-acid transferase (NMB0014) [Neisseria meningitidis MC58] 423 CSGID 2-422 -104.000 34  IDP95140 3-deoxy-D-manno-octulosonic-acid transferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] YP_001337624 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
15 gi|15675963|ref|NP_273081.1| 6-phosphogluconate dehydrogenase (NMB0015) [Neisseria meningitidis MC58] 482 CSGID 2-472 -113.000 52  IDP06299 6-phosphogluconate dehydrogenase [Streptococcus pneumoniae TIGR4] NP_344902 [Streptococcus pneumoniae TIGR4]
16 gi|15675964|ref|NP_273082.1| hypothetical protein (NMB0016) [Neisseria meningitidis MC58] 78 CSGID 7-62 -7.280 23  IDP06124 hypothetical protein jhp0592 [Helicobacter pylori J99] NP_223310 [Helicobacter pylori J99]
17 gi|15675965|ref|NP_273083.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NMB0017) [Neisseria meningitidis MC58] 307 CSGID 1-305 -115.000 49  IDP00307 gene: lpxC; UDP-3-0-acyl N-acetylglucosamine deacetylase CBU_0142 [Coxiella burnetii RSA 493]
18 gi|15675966|ref|NP_273084.1|(removed signalp:1-27) pilin PilE (NMB0018) [Neisseria meningitidis MC58] 143 CSGID 1-143 -24.800 12  IDP01460 fimbrial protein VC2423 [Vibrio cholerae O1 biovar El Tor str. N16961]
19 gi|77358699|ref|YP_338284.1| pilS cassette (NMB0019) [Neisseria meningitidis MC58] 136 CSGID 2-121 -10.500 12  IDP01460 fimbrial protein VC2423 [Vibrio cholerae O1 biovar El Tor str. N16961]
20 gi|77358700|ref|YP_338285.1| pilS cassette (NMB0020) [Neisseria meningitidis MC58] 124 CSGID 2-123 -11.900 10  IDP01460 fimbrial protein VC2423 [Vibrio cholerae O1 biovar El Tor str. N16961]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.