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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 2171< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 gi|77358701|ref|YP_338286.1| pilS cassette (NMB0021) [Neisseria meningitidis MC58] 124 CSGID 2-123 -12.100 10  IDP01460 fimbrial protein VC2423 [Vibrio cholerae O1 biovar El Tor str. N16961]
22 gi|77358702|ref|YP_338287.1| pilS cassette (NMB0022) [Neisseria meningitidis MC58] 112 CSGID 41-106 -5.920 15  IDP01460 fimbrial protein VC2423 [Vibrio cholerae O1 biovar El Tor str. N16961]
23 gi|77358703|ref|YP_338288.1| pilS cassette (NMB0023) [Neisseria meningitidis MC58] 135 CSGID 2-120 -11.000 12  IDP01460 fimbrial protein VC2423 [Vibrio cholerae O1 biovar El Tor str. N16961]
24 gi|77358704|ref|YP_338289.1| pilS cassette (NMB0024) [Neisseria meningitidis MC58] 198 CSGID 3-107 -7.020 12  IDP02679 Type IV pili fiber building block protein [Francisella tularensis subsp. tularensis SCHU S4] FTT0889c [Francisella tularensis subsp. tularensis SCHU S4]
25 gi|77358705|ref|YP_338290.1| large pilS cassette (NMB0025) [Neisseria meningitidis MC58] 225 CSGID 1-224 -17.100 11  IDP01460 fimbrial protein VC2423 [Vibrio cholerae O1 biovar El Tor str. N16961]
26 gi|15677981|ref|NP_273092.1| pilS cassette (NMB0026) [Neisseria meningitidis MC58] 115 CSGID 1-115 -6.900 10  IDP05135 gene: oppA; oligopeptide ABC transporter, substrate-binding lipoprotein [Clostridium difficile 630] CD0855 [Peptoclostridium difficile 630]
27 gi|15675967|ref|NP_273093.1| peptidyl-prolyl cis-trans isomerase (NMB0027) [Neisseria meningitidis MC58] 109 CSGID 2-107 -64.100 46  IDP01085 gene: fklB; FKBP-type 22KD peptidyl-prolyl cis-trans isomerase STM4397 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
28 gi|15675968|ref|NP_273094.1|(removed signalp:1-17) hypothetical protein (NMB0028) [Neisseria meningitidis MC58] 55 CSGID 1-45 -5.710 17  IDP95379 set238a-016 [Vibrio cholerae]
29 gi|15675969|ref|NP_273095.1| glycerate dehydrogenase (NMB0029) [Neisseria meningitidis MC58] 317 CSGID 5-317 -87.700 29  IDP02277 glycerate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA1434 [Bacillus anthracis str. `Ames Ancestor`]
30 gi|15675970|ref|NP_273096.1| methionyl-tRNA synthetase (NMB0030) [Neisseria meningitidis MC58] 685 CSGID 1-684 -210.000 57  IDP90593 gene: metG; methionyl-tRNA synthetase [Yersinia pestis CO92] YPO1522 [Yersinia pestis CO92]
31 gi|15675971|ref|NP_273097.1| D-fructose-6-phosphate amidotransferase (NMB0031) [Neisseria meningitidis MC58] 612 CSGID 1-612 -182.000 43  IDP05186 gene: glmS; glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [Clostridium difficile 630] CD0120 [Peptoclostridium difficile 630]
32 gi|15675972|ref|NP_273098.1| hypothetical protein (NMB0032) [Neisseria meningitidis MC58] 175 CSGID 1-163 -13.800 14  IDP05662 putaive secreted, lysin rich protein [Listeria monocytogenes EGD-e] lmo0303 [Listeria monocytogenes EGD-e]
3-49 -14.400 21  IDP05503 putative lipoprotein [Bacillus anthracis str. Ames] BA_4863 [Bacillus anthracis str. Ames]
33 gi|15675973|ref|NP_273099.1|(removed signalp:1-19) putative membrane-bound lytic murein transglycosylase A (NMB0033) [Neisseria meningitidis MC58] 422 CSGID 1-422 -82.000 27  IDP00462 gene: mltA; murein transglycosylase A YPO1025 [Yersinia pestis CO92]
34 gi|15675974|ref|NP_273100.1| hypothetical protein (NMB0034) [Neisseria meningitidis MC58] 279 CSGID 1-267 -62.100 18  IDP92691 hypothetical protein SAUSA300_0346 [Staphylococcus aureus subsp. aureus USA300_FPR3757] YP_493060 [Staphylococcus aureus subsp. aureus USA300_FPR3757]
35 gi|15675975|ref|NP_273101.1|(removed signalp:1-19) hypothetical protein (NMB0035) [Neisseria meningitidis MC58] 369 CSGID 5-369 -94.100 57  IDP91016 hypothetical protein y2451 [Yersinia pestis KIM 10] y2451 [Yersinia pestis KIM10+]
36 gi|15675976|ref|NP_273102.1|(removed signalp:1-20) hypothetical protein (NMB0036) [Neisseria meningitidis MC58] 401 CSGID 248-384 -5.720 12  IDP00060 Metallothiol transferase fosB 2 (Fosfomycin resistance protein 2) BA_4109 [Bacillus anthracis str. Ames]
37 gi|15675977|ref|NP_273103.1| phnA protein (NMB0037) [Neisseria meningitidis MC58] 109 CSGID 6-68 -7.720 20  IDP02628 putative cytoplasmic protein [Salmonella typhimurium LT2] STM2923 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
38 gi|15675978|ref|NP_273104.1| UDP-N-acetylglucosamine pyrophosphorylase (NMB0038) [Neisseria meningitidis MC58] 456 CSGID 5-456 -133.000 41  IDP05540 gene: glmU; bifunctional protein [Clostridium difficile 630] CD3515 [Peptoclostridium difficile 630]
39 gi|15675979|ref|NP_273105.1|(removed signalp:1-21) hypothetical protein (NMB0039) [Neisseria meningitidis MC58] 69 CSGID 3-59 -5.910 10  IDP02545 beta-lactamase [Francisella tularensis subsp. tularensis SCHU S4] FTT0611c [Francisella tularensis subsp. tularensis SCHU S4]
40 gi|15675980|ref|NP_273106.1| putative hydrolase (NMB0040) [Neisseria meningitidis MC58] 237 CSGID 5-223 -53.900 17  IDP05309 gene: pgmB; beta-phosphoglucomutase [Clostridium difficile 630] CD3128 [Peptoclostridium difficile 630]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Osterman A, Overbeek R, Godzik A. Automatic detection of subsystem/pathway variants in genome analysis. Bioinformatics. 2005 Jun 1;21 Suppl 1:i478-i486.