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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2171next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15675949|ref|NP_273067.1| putative acetyltransferase (NMB0001) [Neisseria meningitidis MC58] 163 PfamA32U 9-145 -31.600 17  PF12568.8; Q2NWW2_SODGM/2-130; Acetyltransferase (GNAT) domain, PanZ
45-163 -35.300 16  PF17013.5; R0MKA5_NOSB1/22-236; Putative acetyl-transferase
2 gi|15675950|ref|NP_273068.1|(removed signalp:1-36) hypothetical protein (NMB0002) [Neisseria meningitidis MC58] 95 PfamA32U 4-72 -9.210 11  PF08614.11; K5XJL3_AGABU/10-204; Autophagy protein 16 (ATG16)
3 gi|15675951|ref|NP_273069.1| glutamyl-tRNA synthetase (NMB0003) [Neisseria meningitidis MC58] 464 PfamA32U 2-292 -78.800 23  PF00749.21; SYQ_ECOLI/27-338; tRNA synthetases class I (E and Q), catalytic domain
4 gi|15675952|ref|NP_273070.1|(removed signalp:1-37) EpiH/GdmH-related protein (NMB0004) [Neisseria meningitidis MC58] 177 PfamA32U 16-162 -39.200 24  PF02698.17; D5CMM5_SIDLE/81-243; DUF218 topsan domain
5 gi|15675953|ref|NP_273071.1| arsenate reductase (NMB0005) [Neisseria meningitidis MC58] 117 PfamA32U 7-116 -55.500 15  PF03960.15; Q9JZ90_NEIMB/5-114; ArsC family
6 gi|15675954|ref|NP_273072.1|(removed signalp:1-22) thioredoxin-related protein (NMB0006) [Neisseria meningitidis MC58] 138 PfamA32U 1-116 -55.600 19  PF00578.21; B8CZ50_HALOH/40-156; AhpC/TSA family
7 gi|15675955|ref|NP_273073.1| ABC transporter ATP-binding protein (NMB0007) [Neisseria meningitidis MC58] 216 PfamA32U 14-215 -33.200 12  PF09818.9; Q10V01_TRIEI/4-493; Predicted ATPase of the ABC class
18-166 -45.000 28  PF00005.27; YTFR_ECOLI/25-174; ABC transporter
8 gi|15675956|ref|NP_273074.1| putative cell division protein FtsX (NMB0008) [Neisseria meningitidis MC58] 305 PfamA32U 64-156 -32.600 17  PF18075.1; A0A0G0SNI0_9BACT/62-154; FtsX extracellular domain
205-296 -12.100 13  PF02687.21; Q7V1V4_PROMP/299-384; FtsX-like permease family
9 gi|15675957|ref|NP_273075.1| BolA/YrbA family protein (NMB0009) [Neisseria meningitidis MC58] 82 PfamA32U 2-76 -42.700 33  PF01722.18; G4T8V3_SERID/11-92; BolA-like protein
10 gi|15675958|ref|NP_273076.1| phosphoglycerate kinase (NMB0010) [Neisseria meningitidis MC58] 403 PfamA32U 10-390 -107.000 45  PF00162.19; K9V4L4_9CYAN/12-388; Phosphoglycerate kinase
11 gi|15675959|ref|NP_273077.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (NMB0011) [Neisseria meningitidis MC58] 417 PfamA32U 6-405 -86.700 59  PF00275.20; MURA_ECOLI/6-406; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
12 gi|15675960|ref|NP_273078.1| hypothetical protein (NMB0012) [Neisseria meningitidis MC58] 323 PfamA32U 85-286 -87.100 50  PF03741.16; Q8EG61_SHEON/77-283; Integral membrane protein TerC family
97-321 -36.400 23  PF04332.15; Q9RSA1_DEIRA/56-346; Protein of unknown function (DUF475 topsan)
13 gi|15675961|ref|NP_273079.1| hypothetical protein (NMB0013) [Neisseria meningitidis MC58] 149 PfamA32U 1-141 -19.300 PF03653.13; Q9A210_CAUVC/4-152; Uncharacterised protein family (UPF0093 topsan)
14 gi|15675962|ref|NP_273080.1| 3-deoxy-D-manno-octulosonic-acid transferase (NMB0014) [Neisseria meningitidis MC58] 423 PfamA32U 33-208 -70.800 39  PF04413.16; B3PCK7_CELJU/37-215; 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
51-418 -14.700 14  PF04007.12; O26874_METTH/16-355; Protein of unknown function (DUF354 topsan)
15 gi|15675963|ref|NP_273081.1| 6-phosphogluconate dehydrogenase (NMB0015) [Neisseria meningitidis MC58] 482 PfamA32U 4-174 -64.700 51  PF03446.15; Q8FTI1_COREF/15-184; NAD binding domain of 6-phosphogluconate dehydrogenase
179-468 -77.300 51  PF00393.19; K8GH81_9CYAN/178-467; 6-phosphogluconate dehydrogenase, C-terminal domain
16 gi|15675964|ref|NP_273082.1| hypothetical protein (NMB0016) [Neisseria meningitidis MC58] 78 PfamA32U 19-69 -7.250 21  PF16239.5; Q97WR8_SULSO/16-95; Domain of unknown function (DUF4898 topsan)
17 gi|15675965|ref|NP_273083.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NMB0017) [Neisseria meningitidis MC58] 307 PfamA32U 3-278 -112.000 57  PF03331.13; D5CP16_SIDLE/4-276; UDP-3-O-acyl N-acetylglycosamine deacetylase
18 gi|15675966|ref|NP_273084.1|(removed signalp:1-27) pilin PilE (NMB0018) [Neisseria meningitidis MC58] 143 PfamA32U 9-136 -35.700 12  PF00114.19; Q60163_MORBO/35-157; Pilin (bacterial filament)
19 gi|77358699|ref|YP_338284.1| pilS cassette (NMB0019) [Neisseria meningitidis MC58] 136 PfamA32U 1-116 -28.800 15  PF00114.19; Q60163_MORBO/35-157; Pilin (bacterial filament)
20 gi|77358700|ref|YP_338285.1| pilS cassette (NMB0020) [Neisseria meningitidis MC58] 124 PfamA32U 1-116 -29.500 12  PF00114.19; Q60163_MORBO/35-157; Pilin (bacterial filament)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.