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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 61954next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 5NQJ Entity 1(prereleased) 377 VFDB 89-374 -62.800 14  [R] COG2234 Predicted aminopeptidases
2 5OLI Entity 1(prereleased) 327 VFDB 17-325 -98.000 27  [R] COG0354 Predicted aminomethyltransferase related to GcvT
3 5VMA Entity 1(prereleased) 703 VFDB 107-601 -7.770 13  [R] COG2936 Predicted acyl esterases
4 5W1P Entity 1(prereleased) 363 VFDB 17-363 -105.000 33  [I] COG3407 Mevalonate pyrophosphate decarboxylase
5 5Y8X Entity 1(prereleased) 398 VFDB 35-397 -92.200 30  [E] COG0405 Gamma-glutamyltransferase
6 5Y8X Entity 2(prereleased) 187 VFDB 1-180 -62.600 29  [E] COG0405 Gamma-glutamyltransferase
7 5YM9 Entity 1(prereleased) 384 VFDB 212-383 -4.650 14  [S] COG3101 Uncharacterized protein conserved in bacteria
8 5YSG Entity 1(prereleased) 124 VFDB 1-94 -51.900 35  [C] COG3794 Plastocyanin
1-124 -9.550 15  [P] COG2822 Predicted periplasmic lipoprotein involved in iron transport
9 5YTA Entity 1(prereleased) 332 VFDB 1-331 -94.800 62  [C] KOG1495 Lactate dehydrogenase
10 5YW3 Entity 1(prereleased) 124 VFDB 1-94 -51.900 34  [C] COG3794 Plastocyanin
1-124 -9.560 15  [P] COG2822 Predicted periplasmic lipoprotein involved in iron transport
11 5YXK Entity 1(prereleased) 111 VFDB 1-109 -15.200 19  [R] KOG3515 Predicted transmembrane protein of the immunoglobulin family of cell adhesion molecules
12 5Z0B Entity 1(prereleased) 585 VFDB 6-566 -9.380 10  [IG] KOG1340 Prosaposin
13 5Z0M Entity 1(prereleased) 275 VFDB 10-238 -7.020 10  [S] COG5619 Uncharacterized conserved protein
14 5Z0M Entity 2(prereleased) 128 VFDB 1-128 -8.440 15  [Q] COG2132 Putative multicopper oxidases
15 5Z4O Entity 1(prereleased) 208 VFDB 1-208 -79.700 83  [L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
16 5Z4P Entity 3(prereleased) 440 VFDB 1-439 -125.000 84  [Z] KOG1376 Alpha tubulin
17 5Z4P Entity 4(prereleased) 431 VFDB 1-431 -119.000 41  [Z] KOG1376 Alpha tubulin
18 5Z4P Entity 6(prereleased) 378 VFDB 3-374 -66.800 18  [O] KOG2158 Tubulin-tyrosine ligase-related protein
19 5Z4Q Entity 5(prereleased) 186 VFDB 111-186 -7.300 17  [S] COG5374 Uncharacterized conserved protein
20 5Z6B Entity 1(prereleased) 427 VFDB 1-421 -67.100 15  [G] COG2182 Maltose-binding periplasmic proteins/domains


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.