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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 17691next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 PF10417.9; A4AVJ3_MARSH/157-196; C-terminal domain of 1-Cys peroxiredoxin 40 COG1018 1-40 -13.300 32  [O] KOG0852 Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes
2 PF12574.8; A0A0F3MK43_9RICK/404-636; 120 KDa Rickettsia surface antigen 233 COG1018 104-233 -7.550 15  [H] COG0307 Riboflavin synthase alpha chain
3 PF09847.9; O29125_ARCFU/30-435; Membrane protein of 12 TMs 406 COG1018 1-406 -142.000 100  [R] COG3368 Predicted permease
4 PF00244.20; G1K9B0_ANOCA/9-229; 14-3-3 protein 221 COG1018 2-221 -92.100 81  [O] KOG0841 Multifunctional chaperone (14-3-3 family)
5 PF16998.5; B9JAN2_AGRRK/36-151; 17 kDa outer membrane surface antigen 116 COG1018 2-111 -41.600 21  [M] COG4520 Surface antigen
6 PF00389.30; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 306 COG1018 1-306 -103.000 48  [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases
7 PF02826.19; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 177 COG1018 1-177 -67.100 31  [CHR] COG1052 Lactate dehydrogenase and related dehydrogenases
8 PF00198.23; A4ICH2_LEIIN/226-463; 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 238 COG1018 1-238 -91.500 44  [C] KOG0557 Dihydrolipoamide acetyltransferase
9 PF16078.5; H6C9R5_EXODN/72-112; 2-oxoglutarate dehydrogenase N-terminus 41 COG1018 1-41 -17.300 31  [C] COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes
10 PF04029.14; H1YDD2_9SPHI/8-231; 2-phosphosulpholactate phosphatase 224 COG1018 8-224 -79.900 30  [HR] COG2045 Phosphosulfolactate phosphohydrolase and related enzymes
11 PF16620.5; L5L3U3_PTEAL/250-410; Unstructured linker between I-set domains 2 and 3 on MYLCK 161 COG1018 3-155 -9.510 11  [R] KOG1777 Putative Zn-finger protein
12 PF05635.11; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein 103 COG1018 27-64 -5.800 18  [V] COG1968 Uncharacterized bacitracin resistance protein
13 PF08521.10; B1Y781_LEPCP/20-172; Two-component sensor kinase N-terminal 153 COG1018 1-87 -8.540 10  [R] COG3726 Uncharacterized membrane protein affecting hemolysin expression
14 PF08793.10; Q0E553_SFAVA/142-176; 2-cysteine adaptor domain 35 COG1018 1-29 -5.820 24  [S] COG4042 Predicted membrane protein
15 PF11591.8; A1YQX2_VOLCA/1-34; Ferredoxin chloroplastic transit peptide 34 COG1018 7-32 -4.180 [S] KOG4051 Uncharacterized conserved protein
16 PF01257.19; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin 148 COG1018 1-147 -74.700 29  [C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit
17 PF08975.10; B9JYZ4_AGRVS/31-145; Domain of unknown function (DUF1868 topsan) 115 COG1018 1-115 -20.900 53  [S] COG5255 Uncharacterized protein conserved in bacteria
18 PF03390.15; Q5WJJ9_BACSK/33-442; 2-hydroxycarboxylate transporter family 410 COG1018 1-410 -110.000 31  [C] COG3493 Na+/citrate symporter
19 PF03171.20; ACCO1_ARATH/158-259; 2OG-Fe(II) oxygenase superfamily 102 COG1018 2-102 -58.100 34  [QR] KOG0143 Iron/ascorbate family oxidoreductases
20 PF13532.6; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily 211 COG1018 1-211 -71.500 37  [A] KOG2731 DNA alkylation damage repair protein


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.