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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 17691next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 PF10417.9; A4AVJ3_MARSH/157-196; C-terminal domain of 1-Cys peroxiredoxin 40 H.sapiens 1-40 -20.000 55  sp|P30041|PRDX6_HUMAN Peroxiredoxin-6 OS=Homo sapiens GN=PRDX6 PE=1 SV=3
2 PF12574.8; A0A0F3MK43_9RICK/404-636; 120 KDa Rickettsia surface antigen 233 H.sapiens 103-205 -8.100 27  sp|Q9BZA8|PC11Y_HUMAN(removed signalp:1-28) Protocadherin-11 Y-linked OS=Homo sapiens GN=PCDH11Y PE=1 SV=1
3 PF09847.9; O29125_ARCFU/30-435; Membrane protein of 12 TMs 406 H.sapiens 202-401 -6.530 sp|Q8IYB8|SUV3_HUMAN(removed signalp:1-18) ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Homo sapiens GN=SUPV3L1 PE=1 SV=1
4 PF00244.20; G1K9B0_ANOCA/9-229; 14-3-3 protein 221 H.sapiens 2-221 -92.800 96  sp|P27348|1433T_HUMAN 14-3-3 protein theta OS=Homo sapiens GN=YWHAQ PE=1 SV=1
5 PF16998.5; B9JAN2_AGRRK/36-151; 17 kDa outer membrane surface antigen 116 H.sapiens 56-108 -8.310 11  sp|Q96FE7|P3IP1_HUMAN(removed signalp:1-21) Phosphoinositide-3-kinase-interacting protein 1 OS=Homo sapiens GN=PIK3IP1 PE=1 SV=2
6 PF00389.30; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 306 H.sapiens 1-306 -101.000 43  sp|O43175|SERA_HUMAN D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4
7 PF02826.19; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 177 H.sapiens 1-177 -72.400 35  sp|Q9UBQ7|GRHPR_HUMAN Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1
8 PF00198.23; A4ICH2_LEIIN/226-463; 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 238 H.sapiens 1-236 -90.700 45  sp|O00330|ODPX_HUMAN Pyruvate dehydrogenase protein X component, mitochondrial OS=Homo sapiens GN=PDHX PE=1 SV=3
36-238 -103.000 49  sp|P10515|ODP2_HUMAN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLAT PE=1 SV=3
9 PF16078.5; H6C9R5_EXODN/72-112; 2-oxoglutarate dehydrogenase N-terminus 41 H.sapiens 1-41 -15.900 48  sp|Q02218|ODO1_HUMAN 2-oxoglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=OGDH PE=1 SV=3
10 PF04029.14; H1YDD2_9SPHI/8-231; 2-phosphosulpholactate phosphatase 224 H.sapiens 5-160 -5.850 sp|A8MYU2|KCNU1_HUMAN Potassium channel subfamily U member 1 OS=Homo sapiens GN=KCNU1 PE=2 SV=2
11 PF16620.5; L5L3U3_PTEAL/250-410; Unstructured linker between I-set domains 2 and 3 on MYLCK 161 H.sapiens 5-139 -18.900 sp|P41440|S19A1_HUMAN Folate transporter 1 OS=Homo sapiens GN=SLC19A1 PE=1 SV=3
12 PF05635.11; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein 103 H.sapiens 1-81 -7.000 19  sp|Q96QP1|ALPK1_HUMAN Alpha-protein kinase 1 OS=Homo sapiens GN=ALPK1 PE=2 SV=3
13 PF08521.10; B1Y781_LEPCP/20-172; Two-component sensor kinase N-terminal 153 H.sapiens 16-152 -6.390 10  sp|Q9Y6A4|CP080_HUMAN UPF0468 protein C16orf80 OS=Homo sapiens GN=C16orf80 PE=1 SV=1
14 PF08793.10; Q0E553_SFAVA/142-176; 2-cysteine adaptor domain 35 H.sapiens 7-28 -8.940 45  sp|Q9Y566|SHAN1_HUMAN SH3 and multiple ankyrin repeat domains protein 1 OS=Homo sapiens GN=SHANK1 PE=1 SV=2
15 PF11591.8; A1YQX2_VOLCA/1-34; Ferredoxin chloroplastic transit peptide 34 H.sapiens 2-28 -6.940 29  sp|Q15424|SAFB1_HUMAN Scaffold attachment factor B1 OS=Homo sapiens GN=SAFB PE=1 SV=4
16 PF01257.19; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin 148 H.sapiens 1-148 -72.900 65  sp|P19404|NDUV2_HUMAN(removed signalp:1-11) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
17 PF08975.10; B9JYZ4_AGRVS/31-145; Domain of unknown function (DUF1868 topsan) 115 H.sapiens 14-115 -12.400 18  sp|Q9P0M2|AKA7G_HUMAN A-kinase anchor protein 7 isoform gamma OS=Homo sapiens GN=AKAP7 PE=2 SV=1
18 PF03390.15; Q5WJJ9_BACSK/33-442; 2-hydroxycarboxylate transporter family 410 H.sapiens 6-408 -8.680 10  sp|Q86UD5|NHDC2_HUMAN Mitochondrial sodium/hydrogen exchanger NHA2 OS=Homo sapiens GN=NHEDC2 PE=1 SV=2
19 PF03171.20; ACCO1_ARATH/158-259; 2OG-Fe(II) oxygenase superfamily 102 H.sapiens 15-102 -10.700 15  sp|Q02809|PLOD1_HUMAN(removed signalp:1-18) Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 OS=Homo sapiens GN=PLOD1 PE=1 SV=2
20 PF13532.6; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily 211 H.sapiens 1-211 -60.400 20  sp|Q13686|ALKB1_HUMAN Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens GN=ALKBH1 PE=1 SV=2

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.