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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 17691next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 PF10417.9; A4AVJ3_MARSH/157-196; C-terminal domain of 1-Cys peroxiredoxin 40 HGM_OVER 3-35 -1.840 12  HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;
2 PF12574.8; A0A0F3MK43_9RICK/404-636; 120 KDa Rickettsia surface antigen 233 HGM_OVER 33-222 -4.950 13  PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
3 PF09847.9; O29125_ARCFU/30-435; Membrane protein of 12 TMs 406 HGM_OVER 189-286 -3.210 PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;
4 PF00244.20; G1K9B0_ANOCA/9-229; 14-3-3 protein 221 HGM_OVER 142-211 -3.110 11  PB000795 Q74Z21_ASHGO/1-280 PB000795; Pfam-B_795;
5 PF16998.5; B9JAN2_AGRRK/36-151; 17 kDa outer membrane surface antigen 116 HGM_OVER 36-115 -5.870 12  PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;
6 PF00389.30; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 306 HGM_OVER 64-229 -3.230 11  PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;
7 PF02826.19; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 177 HGM_OVER 11-156 -3.490 PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]
8 PF00198.23; A4ICH2_LEIIN/226-463; 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 238 HGM_OVER 9-154 -4.730 PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;
9 PF16078.5; H6C9R5_EXODN/72-112; 2-oxoglutarate dehydrogenase N-terminus 41 HGM_OVER 4-38 -2.010 PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;
10 PF04029.14; H1YDD2_9SPHI/8-231; 2-phosphosulpholactate phosphatase 224 HGM_OVER 69-157 -4.730 14  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
11 PF16620.5; L5L3U3_PTEAL/250-410; Unstructured linker between I-set domains 2 and 3 on MYLCK 161 HGM_OVER 85-124 -4.870 15  PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;
12 PF05635.11; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein 103 HGM_OVER 1-99 -2.910 10  PB034180 _Gut.Meta.Jp.0112129_ gi|163310377|dbj|BABD01000320.1||2 (+ 509:1679~0 complete)
13 PF08521.10; B1Y781_LEPCP/20-172; Two-component sensor kinase N-terminal 153 HGM_OVER 1-82 -5.380 12  PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;
14 PF08793.10; Q0E553_SFAVA/142-176; 2-cysteine adaptor domain 35 HGM_OVER 9-32 -1.200 20  PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152
15 PF11591.8; A1YQX2_VOLCA/1-34; Ferredoxin chloroplastic transit peptide 34 HGM_OVER 11-34 -1.360 20  HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;
16 PF01257.19; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin 148 HGM_OVER 32-138 -4.210 PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;
17 PF08975.10; B9JYZ4_AGRVS/31-145; Domain of unknown function (DUF1868 topsan) 115 HGM_OVER 11-102 -3.810 PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]
18 PF03390.15; Q5WJJ9_BACSK/33-442; 2-hydroxycarboxylate transporter family 410 HGM_OVER 98-195 -5.050 PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]
19 PF03171.20; ACCO1_ARATH/158-259; 2OG-Fe(II) oxygenase superfamily 102 HGM_OVER 63-102 -4.720 12  PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
20 PF13532.6; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily 211 HGM_OVER 83-208 -4.620 10  PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.