current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 17691next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 PF10417.9; A4AVJ3_MARSH/157-196; C-terminal domain of 1-Cys peroxiredoxin 40 PDB1018 1-39 -19.300 48  2v2g_A mol:protein length:233 PEROXIREDOXIN 6
2 PF12574.8; A0A0F3MK43_9RICK/404-636; 120 KDa Rickettsia surface antigen 233 PDB1018 1-230 -70.900 26  4lq8_A mol:protein length:340 Sca-family protein
3 PF09847.9; O29125_ARCFU/30-435; Membrane protein of 12 TMs 406 PDB1018 371-406 -6.930 25  5xj0_Y mol:protein length:54 gp76
4 PF00244.20; G1K9B0_ANOCA/9-229; 14-3-3 protein 221 PDB1018 2-221 -93.500 96  2btp_A mol:protein length:256 14-3-3 PROTEIN TAU
5 PF16998.5; B9JAN2_AGRRK/36-151; 17 kDa outer membrane surface antigen 116 PDB1018 2-109 -8.990 13  1u34_A mol:protein length:119 Corticotropin releasing factor receptor 2
6 PF00389.30; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 306 PDB1018 1-304 -109.000 43  2g76_A mol:protein length:335 D-3-phosphoglycerate dehydrogenase
7 PF02826.19; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 177 PDB1018 1-177 -73.400 38  5tx7_A mol:protein length:327 D-isomer specific 2-hydroxyacid dehydrogenase family protein
8 PF00198.23; A4ICH2_LEIIN/226-463; 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 238 PDB1018 1-238 -102.000 33  3mae_A mol:protein length:256 2-oxoisovalerate dehydrogenase E2 component, dihydrolipoamide acetyltransferase
9 PF16078.5; H6C9R5_EXODN/72-112; 2-oxoglutarate dehydrogenase N-terminus 41 PDB1018 1-41 -17.500 29  2jgd_A mol:protein length:933 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT
10 PF04029.14; H1YDD2_9SPHI/8-231; 2-phosphosulpholactate phosphatase 224 PDB1018 1-224 -80.900 31  1vr0_A mol:protein length:247 Probable 2-phosphosulfolactate phosphatase
11 PF16620.5; L5L3U3_PTEAL/250-410; Unstructured linker between I-set domains 2 and 3 on MYLCK 161 PDB1018 33-161 -9.930 10  3gdb_A mol:protein length:937 Putative uncharacterized protein spr0440
39-132 -15.500 14  5lzs_b mol:protein length:245 Uncharacterized protein,eL29
12 PF05635.11; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein 103 PDB1018 1-103 -67.800 35  2gsc_A mol:protein length:128 Putative uncharacterized protein XCC0516
13 PF08521.10; B1Y781_LEPCP/20-172; Two-component sensor kinase N-terminal 153 PDB1018 1-153 -48.600 15  2kse_A mol:protein length:186 Sensor protein qseC
14 PF08793.10; Q0E553_SFAVA/142-176; 2-cysteine adaptor domain 35 PDB1018 7-35 -5.070 28  1jy4_A mol:protein length:35 B4DIMER
15 PF11591.8; A1YQX2_VOLCA/1-34; Ferredoxin chloroplastic transit peptide 34 PDB1018 1-28 -18.500 74  1fct_A mol:protein length:32 FERREDOXIN CHLOROPLASTIC TRANSIT PEPTIDE SEQUENCE FROM THE GREEN ALGA
16 PF01257.19; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin 148 PDB1018 1-148 -75.700 35  2fug_2 mol:protein length:181 NADH-quinone oxidoreductase chain 2
17 PF08975.10; B9JYZ4_AGRVS/31-145; Domain of unknown function (DUF1868 topsan) 115 PDB1018 1-115 -55.200 53  2fsq_A mol:protein length:243 Atu0111 protein
18 PF03390.15; Q5WJJ9_BACSK/33-442; 2-hydroxycarboxylate transporter family 410 PDB1018 1-410 -111.000 31  5x9r_A mol:protein length:438 Citrate-sodium symporter
19 PF03171.20; ACCO1_ARATH/158-259; 2OG-Fe(II) oxygenase superfamily 102 PDB1018 1-102 -64.800 62  1w9y_A mol:protein length:319 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 1
20 PF13532.6; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily 211 PDB1018 1-211 -83.500 38  5xeg_A mol:protein length:231 Oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed


FFAS is supported by the NIH grant R01-GM087218-01
1 2 5 3 1 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.