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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 17691next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 PF10417.9; A4AVJ3_MARSH/157-196; C-terminal domain of 1-Cys peroxiredoxin 40 PfamA32U 10-40 -5.240 19  PF12602.8; Q326X0_SHIDS/1-62; Fertility inhibition protein N terminal
2 PF12574.8; A0A0F3MK43_9RICK/404-636; 120 KDa Rickettsia surface antigen 233 PfamA32U 90-206 -6.780 13  PF15283.6; D3IEK1_9BACT/56-257; Domain of unknown function (DUF4595 topsan) with porin-like fold
3 PF09847.9; O29125_ARCFU/30-435; Membrane protein of 12 TMs 406 PfamA32U 16-404 -12.100 14  PF16949.5; B4D3C0_9BACT/40-578; Putative ATP-binding cassette
4 PF00244.20; G1K9B0_ANOCA/9-229; 14-3-3 protein 221 PfamA32U 88-185 -8.810 20  PF04781.12; B3H4B1_ARATH/23-139; Protein of unknown function (DUF627 topsan)
5 PF16998.5; B9JAN2_AGRRK/36-151; 17 kDa outer membrane surface antigen 116 PfamA32U 9-111 -30.900 16  PF16587.5; B8J263_DESDA/16-118; 17 kDa common-antigen outer membrane protein
6 PF00389.30; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 306 PfamA32U 61-240 -12.100 21  PF05221.17; D9SB20_FIBSS/15-498; S-adenosyl-L-homocysteine hydrolase
100-274 -70.500 36  PF02826.19; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
7 PF02826.19; Q98GE4_RHILO/107-283; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 177 PfamA32U 1-177 -70.500 36  PF00389.30; Q9KCG9_BACHD/20-325; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
8 PF00198.23; A4ICH2_LEIIN/226-463; 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 238 PfamA32U 4-227 -45.700 PF00302.18; B4ET40_PROMH/8-209; Chloramphenicol acetyltransferase
9 PF16078.5; H6C9R5_EXODN/72-112; 2-oxoglutarate dehydrogenase N-terminus 41 PfamA32U 11-41 -5.700 PF10778.9; Q1ITK9_KORVE/30-184; Halocarboxylic acid dehydrogenase DehI
10 PF04029.14; H1YDD2_9SPHI/8-231; 2-phosphosulpholactate phosphatase 224 PfamA32U 17-149 -6.810 PF09445.10; Q6CRW0_KLULA/100-266; RNA cap guanine-N2 methyltransferase
11 PF16620.5; L5L3U3_PTEAL/250-410; Unstructured linker between I-set domains 2 and 3 on MYLCK 161 PfamA32U 1-157 -11.000 12  PF05934.11; CLCC1_RAT/3-541; Mid-1-related chloride channel (MCLC)
12 PF05635.11; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein 103 PfamA32U 4-90 -6.770 11  PF10033.9; ATG13_ASPOR/73-313; Autophagy-related protein 13
13 PF08521.10; B1Y781_LEPCP/20-172; Two-component sensor kinase N-terminal 153 PfamA32U 1-87 -9.030 10  PF10144.9; SMP_YERPE/1-162; Bacterial virulence factor haemolysin
14 PF08793.10; Q0E553_SFAVA/142-176; 2-cysteine adaptor domain 35 PfamA32U 9-30 -5.880 22  PF07173.12; J3N9M9_ORYBR/94-237; Glycine-rich domain-containing protein-like
15 PF11591.8; A1YQX2_VOLCA/1-34; Ferredoxin chloroplastic transit peptide 34 PfamA32U 3-26 -6.820 25  PF08377.10; F1MAQ5_RAT/374-1507; MAP2/Tau projection domain
16 PF01257.19; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin 148 PfamA32U 71-147 -17.400 18  PF07845.11; K9UG38_CHAP6/7-125; Protein of unknown function (DUF1636 topsan)
17 PF08975.10; B9JYZ4_AGRVS/31-145; Domain of unknown function (DUF1868 topsan) 115 PfamA32U 16-111 -10.100 10  PF10469.9; A7UR96_ANOGA/136-349; AKAP7 2`5` RNA ligase-like domain
18 PF03390.15; Q5WJJ9_BACSK/33-442; 2-hydroxycarboxylate transporter family 410 PfamA32U 35-403 -13.400 13  PF05684.12; Q9FLW1_ARATH/79-442; Protein of unknown function (DUF819 topsan)
19 PF03171.20; ACCO1_ARATH/158-259; 2OG-Fe(II) oxygenase superfamily 102 PfamA32U 16-98 -8.970 10  PF08007.12; Q9CP87_PASMU/26-337; Cupin superfamily protein
20 PF13532.6; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily 211 PfamA32U 1-206 -12.500 PF05721.13; Q92PC6_RHIME/55-292; Phytanoyl-CoA dioxygenase (PhyH)
74-210 -13.700 17  PF09859.9; Q98JN4_RHILO/75-246; Oxygenase, catalysing oxidative methylation of damaged DNA


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.