current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2876next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15922991|ref|NP_370525.1| chromosomal replication initiation protein (SAV0001) [Staphylococcus aureus subsp. aureus Mu50] 453 COG1018 1-452 -122.000 37  [L] COG0593 ATPase involved in DNA replication initiation
CSGID 2-451 -132.000 61  IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames]
H.sapiens 79-453 -11.600 11  sp|P35250|RFC2_HUMAN Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3
81-327 -11.800 16  sp|Q96S55|WRIP1_HUMAN ATPase WRNIP1 OS=Homo sapiens GN=WRNIP1 PE=1 SV=2 (Range: 151-450)
117-349 -13.500 13  sp|Q9NVI7|ATD3A_HUMAN ATPase family AAA domain-containing protein 3A OS=Homo sapiens GN=ATAD3A PE=1 SV=2 (Range: 301-600)
152-370 -15.400 15  sp|Q6PL18|ATAD2_HUMAN ATPase family AAA domain-containing protein 2 OS=Homo sapiens GN=ATAD2 PE=1 SV=1 (Range: 451-750)
152-425 -13.200 13  sp|Q13608|PEX6_HUMAN Peroxisome assembly factor 2 OS=Homo sapiens GN=PEX6 PE=1 SV=2 (Range: 451-750)
HGM_OVER 114-442 -3.630 11  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
NEW_HUMAN_DOMAINS 184-381 -5.100 12  sp|Q6ZV50|RFX8_HUMAN DNA-binding protein RFX8 OS=Homo sapiens GN=RFX8 PE=2 SV=2 (Range: 148-329)
PDB1018 6-452 -122.000 34  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dnaA
PfamA32U 4-67 -17.500 20  PF11638.8; DNAA_LAWIP/5-67; DnaA N-terminal domain
116-334 -100.000 64  PF00308.18; DNAA_STRCO/317-535; Bacterial dnaA protein
152-453 -10.000 13  PF03969.16; ZAPE_ECOLI/4-371; AFG1-like ATPase
361-429 -34.400 69  PF08299.11; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix
SCOP207 114-329 -93.000 37  d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
346-452 -42.700 34  d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}
VFDB 1-452 -122.000 37  [L] COG0593 ATPase involved in DNA replication initiation
2 gi|15922992|ref|NP_370526.1| DNA polymerase III subunit beta (SAV0002) [Staphylococcus aureus subsp. aureus Mu50] 377 COG1018 2-376 -98.300 26  [L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)
CSGID 2-377 -108.000 53  IDP04571 DNA polymerase III subunit beta [Bacillus anthracis str. Sterne] BAS0002 [Bacillus anthracis str. Sterne]
H.sapiens 135-372 -10.600 16  sp|Q6WBX8|RAD9B_HUMAN Cell cycle checkpoint control protein RAD9B OS=Homo sapiens GN=RAD9B PE=1 SV=2
HGM_OVER 2-206 -4.190 10  PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]
NEW_HUMAN_DOMAINS 139-265 -3.830 11  sp|Q5VZK9|LR16A_HUMAN Leucine-rich repeat-containing protein 16A OS=Homo sapiens GN=LRRC16A PE=1 SV=1 (Range: 1-128)
PDB1018 2-377 -108.000 54  4tr6_A mol:protein length:380 DNA polymerase III subunit beta
PfamA32U 2-127 -43.800 27  PF00712.19; DPO3B_CAUVC/1-121; DNA polymerase III beta subunit, N-terminal domain
137-251 -52.300 28  PF02767.16; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
253-375 -52.400 49  PF02768.15; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
SCOP207 1-130 -52.100 18  d5w7za1 d.131.1.0 (A:1-122) automated matches {Rickettsia conorii [TaxId: 272944]}
131-252 -55.600 27  d4k3la2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
253-375 -50.700 21  d4k3la3 d.131.1.1 (A:245-365) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
VFDB 2-376 -98.300 26  [L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)
3 gi|15922993|ref|NP_370527.1| hypothetical protein (SAV0003) [Staphylococcus aureus subsp. aureus Mu50] 81 COG1018 4-70 -33.300 40  [S] COG2501 Uncharacterized conserved protein
CSGID 4-69 -24.700 18  IDP90550 gene: rpsD; 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1594 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
H.sapiens 15-64 -21.800 10  sp|P46781|RS9_HUMAN 40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3
HGM_OVER 25-58 -3.920 PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]
NEW_HUMAN_DOMAINS 28-81 -7.320 14  sp|Q8IUI8|CRLF3_HUMAN Cytokine receptor-like factor 3 OS=Homo sapiens GN=CRLF3 PE=1 SV=2 (Range: 281-442)
PDB1018 8-70 -33.900 27  1p9k_A mol:protein length:79 orf, hypothetical protein
PfamA32U 7-70 -31.900 34  PF13275.6; D4IXS8_BUTFI/4-68; S4 domain
SCOP207 10-70 -34.000 27  d1p9ka1 d.66.1.6 (A:3-79) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
VFDB 4-70 -33.300 40  [S] COG2501 Uncharacterized conserved protein
4 gi|15922994|ref|NP_370528.1| recombination protein F (SAV0004) [Staphylococcus aureus subsp. aureus Mu50] 370 COG1018 1-370 -104.000 23  [L] COG1195 Recombinational DNA repair ATPase (RecF pathway)
CSGID 1-370 -104.000 23  IDP00109 gene: recF; Rec protein NT01SF4517 [Shigella flexneri 2a str. 2457T]
H.sapiens 1-254 -17.500 16  sp|Q92878|RAD50_HUMAN DNA repair protein RAD50 OS=Homo sapiens GN=RAD50 PE=1 SV=1 (Range: 1-300)
3-199 -18.500 15  sp|Q8IY18|SMC5_HUMAN Structural maintenance of chromosomes protein 5 OS=Homo sapiens GN=SMC5 PE=1 SV=2 (Range: 1-300)
119-351 -11.900 13  sp|Q92878|RAD50_HUMAN DNA repair protein RAD50 OS=Homo sapiens GN=RAD50 PE=1 SV=1 (Range: 1051-1312)
HGM_OVER 141-269 -3.240 14  PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;
NEW_HUMAN_DOMAINS 285-347 -5.160 12  sp|Q86UP3|ZFHX4_HUMAN Zinc finger homeobox protein 4 OS=Homo sapiens GN=ZFHX4 PE=1 SV=1 (Range: 271-370)
PDB1018 1-370 -105.000 32  5z68_A mol:protein length:373 DNA replication and repair protein RecF
PfamA32U 1-350 -24.000 12  PF13175.6; I1YS32_PREI7/1-378; AAA ATPase domain
SCOP207 1-348 -30.600 14  g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Pyrococcus furiosus [TaxId: 2261]}
VFDB 1-370 -104.000 23  [L] COG1195 Recombinational DNA repair ATPase (RecF pathway)
5 gi|15922995|ref|NP_370529.1| DNA gyrase subunit B (SAV0005) [Staphylococcus aureus subsp. aureus Mu50] 644 COG1018 7-644 -151.000 56  [L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
CSGID 5-644 -202.000 69  IDP04572 DNA gyrase subunit B [Bacillus anthracis str. Sterne] BAS0005 [Bacillus anthracis str. Sterne]
H.sapiens 2-251 -70.700 20  sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 (Range: 1-300)
91-404 -79.800 16  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 151-450)
271-567 -102.000 24  sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 (Range: 301-600)
405-640 -84.600 28  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 451-750)
HGM_OVER 457-643 -3.170 13  HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;
NEW_HUMAN_DOMAINS 431-505 -6.790 17  sp|Q6IEE8|SN12L_HUMAN Schlafen family member 12-like OS=Homo sapiens GN=SLFN12L PE=2 SV=3 (Range: 1-81)
PDB1018 2-644 -180.000 50  4juo_C mol:protein length:670 DNA topoisomerase 4 subunit B
PfamA32U 43-147 -13.800 15  PF13589.6; A5G4D8_GEOUR/22-165; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
232-402 -60.900 44  PF00204.25; A9KS52_LACP7/226-396; DNA gyrase B
540-643 -36.900 18  PF16898.5; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM
SCOP207 24-228 -85.200 63  d4k4oa1 d.122.1.0 (A:18-224) automated matches {Enterococcus faecalis [TaxId: 226185]}
232-403 -59.900 40  d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
405-643 -50.100 27  d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
424-624 -95.900 58  d3m4ia_ e.78.1.1 (A:) DNA gyrase beta-prime domain {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 7-644 -151.000 56  [L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
6 gi|15922996|ref|NP_370530.1| DNA gyrase subunit A (SAV0006) [Staphylococcus aureus subsp. aureus Mu50] 889 COG1018 3-840 -158.000 42  [L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
CSGID 1-889 -178.000 99  IDP91874 gene: gyrA; DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315] SA0006 [Staphylococcus aureus subsp. aureus N315]
H.sapiens 6-223 -45.000 22  sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 (Range: 601-900)
50-361 -55.700 22  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 751-1050)
228-508 -26.700 16  sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3 (Range: 901-1200)
HGM_OVER 14-178 -2.200 16  HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;
NEW_HUMAN_DOMAINS 67-184 -4.800 18  sp|P52951|GBX2_HUMAN Homeobox protein GBX-2 OS=Homo sapiens GN=GBX2 PE=2 SV=3 (Range: 1-109)
PDB1018 1-490 -119.000 99  2xco_A mol:protein length:726 DNA GYRASE SUBUNIT B, DNA GYRASE SUBUNIT A
31-757 -125.000 36  1zvu_A mol:protein length:716 Topoisomerase IV subunit A
503-812 -37.200 42  1zi0_A mol:protein length:307 DNA gyrase subunit A
609-875 -24.200 14  4mn4_A mol:protein length:259 DNA topoisomerase 4 subunit A
PfamA32U 33-473 -62.600 20  PF00521.20; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A
SCOP207 31-489 -110.000 56  d3ilwa_ e.11.1.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}
503-812 -36.200 35  d4g3na_ b.68.10.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}
VFDB 3-840 -158.000 42  [L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
7 gi|15922997|ref|NP_370531.1| hypothetical protein (SAV0007) [Staphylococcus aureus subsp. aureus Mu50] 276 COG1018 2-276 -78.200 26  [G] COG0063 Predicted sugar kinase
CSGID 2-276 -73.500 28  IDP02117 gene: yjeF; hypothetical protein STM4356 [Salmonella typhimurium LT2] STM4356 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 1-276 -75.200 20  sp|Q8IW45|CARKD_HUMAN(removed signalp:1-25) Carbohydrate kinase domain-containing protein OS=Homo sapiens GN=CARKD PE=1 SV=1
HGM_OVER 1-157 -3.000 13  PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;
NEW_HUMAN_DOMAINS 14-159 -5.230 11  sp|Q8TCI5|CA088_HUMAN Uncharacterized protein C1orf88 OS=Homo sapiens GN=C1orf88 PE=2 SV=2 (Range: 1-191)
PDB1018 2-276 -93.100 45  2r3b_A mol:protein length:310 YjeF-related protein
PfamA32U 30-269 -76.700 29  PF01256.17; NNRD_BACSU/30-270; Carbohydrate kinase
SCOP207 4-276 -95.200 45  d2r3ba1 c.72.1.0 (A:1-276) automated matches {Enterococcus faecalis [TaxId: 226185]}
VFDB 2-276 -78.200 26  [G] COG0063 Predicted sugar kinase
8 gi|161375866|ref|NP_370532.2| histidine ammonia-lyase (SAV0008) [Staphylococcus aureus subsp. aureus Mu50] 504 COG1018 2-503 -137.000 38  [E] COG2986 Histidine ammonia-lyase
CSGID 3-503 -138.000 62  IDP01218 Histidine ammonia-lyase (Histidase) BA_3712 [Bacillus anthracis str. Ames]
H.sapiens 2-188 -56.300 44  sp|P42357|HUTH_HUMAN Histidine ammonia-lyase OS=Homo sapiens GN=HAL PE=1 SV=1 (Range: 1-300)
40-335 -98.200 44  sp|P42357|HUTH_HUMAN Histidine ammonia-lyase OS=Homo sapiens GN=HAL PE=1 SV=1 (Range: 151-450)
189-486 -91.100 45  sp|P42357|HUTH_HUMAN Histidine ammonia-lyase OS=Homo sapiens GN=HAL PE=1 SV=1 (Range: 301-600)
HGM_OVER 52-140 -4.010 11  PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;
NEW_HUMAN_DOMAINS 141-182 -5.050 28  sp|Q8WV15|FA70B_HUMAN Protein FAM70B OS=Homo sapiens GN=FAM70B PE=1 SV=1 (Range: 218-272)
PDB1018 2-503 -137.000 38  1b8f_A mol:protein length:509 Histidine ammonia-lyase
PfamA32U 10-471 -129.000 38  PF00221.19; HUTH_IDILO/11-471; Aromatic amino acid lyase
SCOP207 2-503 -137.000 38  d1gkma_ a.127.1.2 (A:) Histidine ammonia-lyase (HAL) {Pseudomonas putida [TaxId: 303]}
VFDB 2-503 -137.000 38  [E] COG2986 Histidine ammonia-lyase
9 gi|15922999|ref|NP_370533.1| seryl-tRNA synthetase (SAV0009) [Staphylococcus aureus subsp. aureus Mu50] 428 COG1018 1-424 -130.000 55  [J] COG0172 Seryl-tRNA synthetase
CSGID 1-428 -132.000 99  IDP05331 gene: serS; seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL0009 [Staphylococcus aureus subsp. aureus COL]
H.sapiens 1-422 -118.000 33  sp|P49591|SYSC_HUMAN Seryl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3
HGM_OVER 219-413 -3.620 11  PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;
NEW_HUMAN_DOMAINS 250-416 -5.790 16  tr|E5RG91|E5RG91_HUMAN Uncharacterized protein OS=Homo sapiens GN=VPS37A PE=4 SV=1 (Range: 130-317)
PDB1018 1-425 -128.000 51  2dq3_A mol:protein length:425 Seryl-tRNA synthetase
PfamA32U 1-108 -30.600 25  PF02403.22; C5WTV8_SORBI/1-114; Seryl-tRNA synthetase N-terminal domain
218-400 -13.500 14  PF00587.25; SYT_ECOLI/318-529; tRNA synthetase class II core domain (G, H, P, S and T)
SCOP207 1-113 -33.800 23  d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
116-425 -112.000 39  d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
VFDB 1-424 -130.000 55  [J] COG0172 Seryl-tRNA synthetase
10 gi|15923000|ref|NP_370534.1| hypothetical protein (SAV0010) [Staphylococcus aureus subsp. aureus Mu50] 231 COG1018 2-231 -84.700 22  [E] COG1296 Predicted branched-chain amino acid permease (azaleucine resistance)
CSGID 57-229 -6.980 10  IDP91946 integral membrane protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100004617 [Streptococcus pneumoniae str. Canada MDR_19A]
H.sapiens 28-177 -9.470 14  sp|Q6ZSS7|MFSD6_HUMAN Major facilitator superfamily domain-containing protein 6 OS=Homo sapiens GN=MFSD6 PE=1 SV=2 (Range: 451-750)
HGM_OVER 22-231 -8.390 PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;
NEW_HUMAN_DOMAINS 45-144 -5.630 12  sp|Q8N2C7|UNC80_HUMAN Protein unc-80 homolog OS=Homo sapiens GN=UNC80 PE=2 SV=2 (Range: 1-120)
PDB1018 25-97 -7.810 1bcc_G mol:protein length:81 UBIQUINOL CYTOCHROME C OXIDOREDUCTASE
PfamA32U 16-156 -74.000 30  PF03591.14; I0I5R9_CALAS/20-162; AzlC protein
SCOP207 25-97 -6.940 d1pp9g_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
VFDB 2-231 -84.700 22  [E] COG1296 Predicted branched-chain amino acid permease (azaleucine resistance)
11 gi|15923001|ref|NP_370535.1|(removed signalp:1-29) hypothetical protein (SAV0011) [Staphylococcus aureus subsp. aureus Mu50] 80 COG1018 1-80 -38.600 16  [S] COG4392 Predicted membrane protein
CSGID 1-44 -5.960 20  IDP05521 putative cell surface protein [Clostridium difficile 630] CD1858 [Peptoclostridium difficile 630]
H.sapiens 9-80 -8.530 11  sp|Q08357|S20A2_HUMAN(removed signalp:1-21) Sodium-dependent phosphate transporter 2 OS=Homo sapiens GN=SLC20A2 PE=1 SV=1 (Range: 151-450)
HGM_OVER 5-76 -6.390 14  PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;
NEW_HUMAN_DOMAINS 53-80 -4.900 10  sp|P04035|HMDH_HUMAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Homo sapiens GN=HMGCR PE=1 SV=1 (Range: 280-425)
PDB1018 1-25 -8.960 12  6h8q_G mol:protein length:100 Sister chromatid cohesion protein 1
PfamA32U 1-76 -18.600 14  PF05437.12; Q8NTP7_CORGL/8-105; Branched-chain amino acid transport protein (AzlD)
SCOP207 1-26 -5.600 19  d1p8ba_ g.3.6.4 (A:) Pab1, subunit b {Pea (Pisum sativum) [TaxId: 3888]}
VFDB 1-80 -38.600 16  [S] COG4392 Predicted membrane protein
12 gi|15923002|ref|NP_370536.1| putative homoserine-o-acetyltransferase (SAV0012) [Staphylococcus aureus subsp. aureus Mu50] 329 COG1018 4-325 -102.000 26  [E] COG2021 Homoserine acetyltransferase
CSGID 8-327 -98.300 20  IDP01610 homoserine O-acetyltransferase [Bacillus anthracis str. `Ames Ancestor`] GBAA4983 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 1-325 -27.900 13  sp|Q8WTS1|ABHD5_HUMAN 1-acylglycerol-3-phosphate O-acyltransferase ABHD5 OS=Homo sapiens GN=ABHD5 PE=1 SV=1
28-322 -36.100 15  sp|Q86WA6|BPHL_HUMAN(removed signalp:1-25) Valacyclovir hydrolase OS=Homo sapiens GN=BPHL PE=1 SV=1
HGM_OVER 97-180 -2.700 11  HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;
NEW_HUMAN_DOMAINS 26-86 -5.650 11  sp|Q6NXP0|CC025_HUMAN EF-hand domain-containing protein C3orf25 OS=Homo sapiens GN=C3orf25 PE=2 SV=1 (Range: 505-572)
PDB1018 8-329 -118.000 99  4qlo_A mol:protein length:360 homoserine O-acetyltransferase
PfamA32U 28-323 -34.700 11  PF03096.14; NDRG2_HUMAN/40-318; Ndr family
SCOP207 9-324 -106.000 26  d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]}
VFDB 4-325 -102.000 26  [E] COG2021 Homoserine acetyltransferase
13 gi|15923003|ref|NP_370537.1| hypothetical protein (SAV0013) [Staphylococcus aureus subsp. aureus Mu50] 331 COG1018 27-330 -57.500 20  [S] COG4241 Predicted membrane protein
CSGID 10-82 -8.150 23  IDP01790 gene: obgE; GTPase ObgE [Francisella tularensis subsp. tularensis SCHU S4] FTT1731c [Francisella tularensis subsp. tularensis SCHU S4]
H.sapiens 7-63 -10.400 31  sp|Q9Y5G0|PCDGH_HUMAN(removed signalp:1-30) Protocadherin gamma-B5 OS=Homo sapiens GN=PCDHGB5 PE=2 SV=1 (Range: 601-893)
HGM_OVER 19-195 -7.190 13  PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;
NEW_HUMAN_DOMAINS 1-57 -6.120 14  sp|Q9UBI9|HDC_HUMAN Headcase protein homolog OS=Homo sapiens GN=HECA PE=1 SV=1 (Range: 89-189)
PDB1018 10-82 -8.090 27  1lnz_A mol:protein length:342 SPO0B-associated GTP-binding protein
PfamA32U 37-317 -52.200 23  PF09991.9; U5LGL3_9BACI/15-301; Predicted membrane protein (DUF2232 topsan)
SCOP207 8-82 -9.040 26  d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}
VFDB 27-330 -57.500 20  [S] COG4241 Predicted membrane protein
14 gi|15923004|ref|NP_370538.1|(removed signalp:1-32) hypothetical protein (SAV0014) [Staphylococcus aureus subsp. aureus Mu50] 623 COG1018 2-622 -126.000 50  [T] COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
CSGID 28-270 -13.800 14  IDP04188 sensory box/GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961] VCA0939 [Vibrio cholerae O1 biovar El Tor str. N16961]
30-554 -12.700 11  IDP90964 Sensory box/GGDEF family protein VC0072 [Vibrio cholerae]
81-604 -11.200 11  IDP90960 C-di-GMP phosphodiesterase A-related protein VC0658 [Vibrio cholerae]
H.sapiens 289-623 -16.200 12  sp|Q86TP1|PRUNE_HUMAN Protein prune homolog OS=Homo sapiens GN=PRUNE PE=1 SV=2
HGM_OVER 211-327 -4.540 15  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
NEW_HUMAN_DOMAINS 164-236 -4.060 13  sp|Q8TDJ6|DMXL2_HUMAN DmX-like protein 2 OS=Homo sapiens GN=DMXL2 PE=1 SV=2 (Range: 489-568)
PDB1018 20-127 -25.200 28  2m1c_A mol:protein length:113 DHH subfamily 1 protein
122-270 -14.900 13  6eib_A mol:protein length:163 Sensory box/GGDEF family protein
282-623 -85.600 99  5xsi_A mol:protein length:343 Phosphodiesterase acting on cyclic dinucleotides
PfamA32U 74-268 -14.800 11  PF05165.12; GCH3_METTH/1-249; GTP cyclohydrolase III
485-617 -28.300 19  PF02272.19; Y1633_METJA/328-463; DHHA1 domain
SCOP207 122-267 -14.400 15  d2v0na3 d.58.29.2 (A:294-454) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]}
304-618 -37.500 14  d1k20a_ c.107.1.1 (A:) Manganese-dependent inorganic pyrophosphatase (family II) {Streptococcus gordonii [TaxId: 1302]}
VFDB 2-622 -126.000 50  [T] COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
15 gi|15923005|ref|NP_370539.1| 50S ribosomal protein L9 (SAV0015) [Staphylococcus aureus subsp. aureus Mu50] 148 COG1018 1-147 -70.200 32  [J] COG0359 Ribosomal protein L9
CSGID 1-148 -81.000 57  IDP04628 50S ribosomal protein L9 [Bacillus anthracis str. Sterne] BAS5322 [Bacillus anthracis str. Sterne]
H.sapiens 1-148 -55.600 20  sp|Q9BYD2|RM09_HUMAN 39S ribosomal protein L9, mitochondrial OS=Homo sapiens GN=MRPL9 PE=1 SV=2
HGM_OVER 21-148 -4.070 11  HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;
NEW_HUMAN_DOMAINS 112-148 -5.590 10  sp|Q16787|LAMA3_HUMAN Laminin subunit alpha-3 OS=Homo sapiens GN=LAMA3 PE=1 SV=2 (Range: 1112-1222)
PDB1018 1-148 -81.000 59  1div_A mol:protein length:149 RIBOSOMAL PROTEIN L9
PfamA32U 1-47 -32.400 57  PF01281.19; RL9_FERNB/1-47; Ribosomal protein L9, N-terminal domain
63-147 -41.400 34  PF03948.14; R7G1M1_9FIRM/63-146; Ribosomal protein L9, C-terminal domain
SCOP207 1-52 -34.800 69  d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]}
56-148 -47.200 54  d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus stearothermophilus [TaxId: 1422]}
VFDB 1-147 -70.200 32  [J] COG0359 Ribosomal protein L9
16 gi|15923006|ref|NP_370540.1| replicative DNA helicase (SAV0016) [Staphylococcus aureus subsp. aureus Mu50] 466 COG1018 2-465 -122.000 41  [L] COG0305 Replicative DNA helicase
CSGID 1-465 -129.000 58  IDP04627 replicative DNA helicase [Bacillus anthracis str. Sterne] BAS5321 [Bacillus anthracis str. Sterne]
H.sapiens 49-263 -13.800 13  sp|Q96RR1|PEO1_HUMAN(removed signalp:1-19) Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1 (Range: 151-450)
114-446 -50.200 17  sp|Q96RR1|PEO1_HUMAN(removed signalp:1-19) Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1 (Range: 301-600)
HGM_OVER 306-397 -3.500 15  HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;
NEW_HUMAN_DOMAINS 341-400 -5.030 29  sp|Q5U5X8|CL034_HUMAN Uncharacterized protein C12orf34 OS=Homo sapiens GN=C12orf34 PE=2 SV=1 (Range: 380-452)
PDB1018 1-465 -129.000 59  2r6a_A mol:protein length:454 Replicative helicase
PfamA32U 9-111 -46.100 37  PF00772.21; Q1MZU6_9GAMM/10-112; DnaB-like helicase N terminal domain
185-457 -98.000 47  PF03796.15; Q4K7N7_PSEF5/180-438; DnaB-like helicase C terminal domain
SCOP207 10-111 -46.400 43  d1b79a_ a.81.1.1 (A:) N-terminal domain of DnaB helicase {Escherichia coli [TaxId: 562]}
169-457 -55.600 17  d1cr1a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}
VFDB 2-465 -122.000 41  [L] COG0305 Replicative DNA helicase
17 gi|15923007|ref|NP_370541.1| adenylosuccinate synthetase (SAV0017) [Staphylococcus aureus subsp. aureus Mu50] 427 COG1018 1-427 -136.000 65  [F] COG0104 Adenylosuccinate synthase
CSGID 1-427 -137.000 71  IDP01765 gene: purA; adenylosuccinate synthetase [Bacillus anthracis str. `Ames Ancestor`] GBAA5716 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 2-423 -131.000 40  sp|Q8N142|PURA1_HUMAN Adenylosuccinate synthetase isozyme 1 OS=Homo sapiens GN=ADSSL1 PE=1 SV=1
HGM_OVER 39-87 -3.330 23  PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)
NEW_HUMAN_DOMAINS 2-74 -4.890 16  sp|Q6ZTK2|YP015_HUMAN Putative uncharacterized protein LOC400499 OS=Homo sapiens PE=2 SV=1 (Range: 246-313)
PDB1018 1-427 -137.000 71  4m0g_A mol:protein length:432 Adenylosuccinate synthetase
PfamA32U 4-421 -129.000 40  PF00709.21; S3D6Z3_GLAL2/4-421; Adenylosuccinate synthetase
SCOP207 1-423 -135.000 71  d4m9da_ c.37.1.0 (A:) automated matches {Bacillus anthracis [TaxId: 261594]}
VFDB 1-427 -136.000 65  [F] COG0104 Adenylosuccinate synthase
18 gi|15923008|ref|NP_370542.1| response regulator (SAV0018) [Staphylococcus aureus subsp. aureus Mu50] 235 COG1018 3-234 -99.600 36  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
CSGID 3-233 -105.000 41  IDP91043 gene: vanRG; response regulator [Enterococcus faecalis] EFE0003 [Enterococcus faecalis]
H.sapiens 7-181 -29.800 13  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2 (Range: 1-300)
7-231 -22.700 11  sp|O60658|PDE8A_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8A OS=Homo sapiens GN=PDE8A PE=1 SV=2 (Range: 1-300)
HGM_OVER 61-118 -3.450 19  PB039305 _Gut.Meta.Jp.0057508_ gi|162726131|dbj|BAAY01002830.1||2 (- 1092:1581~0 complete)
NEW_HUMAN_DOMAINS 6-135 -32.500 13  sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens GN=SOHLH2 PE=2 SV=2 (Range: 1-196)
PDB1018 2-235 -104.000 44  2gwr_A mol:protein length:238 DNA-binding response regulator mtrA
PfamA32U 1-217 -55.200 13  PF01993.18; F6D7B4_METPW/3-276; methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase
SCOP207 4-124 -64.800 30  d2qzja_ c.23.1.0 (A:) automated matches {Clostridium difficile [TaxId: 272563]}
4-174 -54.900 19  d3rqia_ c.23.1.0 (A:) automated matches {Burkholderia pseudomallei [TaxId: 320372]}
137-235 -49.400 78  d2hwva1 a.4.6.0 (A:134-232) automated matches {Enterococcus faecalis [TaxId: 226185]}
VFDB 3-234 -99.600 36  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
19 gi|15923009|ref|NP_370543.1| two-component sensor histidine kinase (SAV0019) [Staphylococcus aureus subsp. aureus Mu50] 608 COG1018 1-608 -140.000 45  [T] COG5002 Signal transduction histidine kinase
CSGID 1-607 -136.000 46  IDP04694 gene: yycG; sensory box histidine kinase YycG [Bacillus anthracis str. `Ames Ancestor`] GBAA5714 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 235-462 -18.400 12  sp|O60658|PDE8A_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8A OS=Homo sapiens GN=PDE8A PE=1 SV=2 (Range: 151-450)
363-605 -32.900 18  sp|O14874|BCKD_HUMAN [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Homo sapiens GN=BCKDK PE=1 SV=2
HGM_OVER 207-596 -3.750 PB034679 gi|150005530|ref|YP_001300274.1| hypothetical protein BVU_3014 [Bacteroides vulgatus ATCC 8482]gi|149933954|gb|ABR40652.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
NEW_HUMAN_DOMAINS 360-507 -4.940 10  sp|Q9P278|FNIP2_HUMAN Folliculin-interacting protein 2 OS=Homo sapiens GN=FNIP2 PE=1 SV=2 (Range: 312-450)
PDB1018 32-182 -29.600 98  4ywz_A mol:protein length:152 Sensor protein kinase WalK
170-607 -109.000 38  4i5s_A mol:protein length:450 Putative histidine kinase CovS; VicK-like protein
PfamA32U 1-182 -12.700 13  PF10144.9; SMP_YERPE/1-162; Bacterial virulence factor haemolysin
39-169 -22.100 16  PF16736.5; Q65G91_BACLD/33-148; Single Cache-like
202-253 -16.100 34  PF00672.25; P71914_MYCTU/462-514; HAMP domain
265-367 -13.800 10  PF13596.6; C1CZ44_DEIDV/745-850; PAS domain
376-442 -21.700 29  PF00512.25; Q55783_SYNY3/185-253; His Kinase A (phospho-acceptor) domain
486-598 -44.900 35  PF02518.26; O52937_9CYAN/626-739; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
SCOP207 247-366 -13.800 11  d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}
358-444 -40.900 29  d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
445-601 -55.000 36  d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
VFDB 1-608 -140.000 45  [T] COG5002 Signal transduction histidine kinase
20 gi|15923010|ref|NP_370544.1| hypothetical protein (SAV0020) [Staphylococcus aureus subsp. aureus Mu50] 453 COG1018 11-453 -99.300 16  [S] COG4863 Uncharacterized protein conserved in bacteria
CSGID 11-450 -24.400 13  IDP01153 yycI protein BA_5712 [Bacillus anthracis str. Ames]
H.sapiens 1-37 -6.470 16  sp|Q9P0B6|CF129_HUMAN Transmembrane and coiled-coil domain-containing protein C6orf129 OS=Homo sapiens GN=C6orf129 PE=2 SV=2
HGM_OVER 4-74 -6.530 PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;
NEW_HUMAN_DOMAINS 1-98 -6.860 14  sp|Q14494|NF2L1_HUMAN Nuclear factor erythroid 2-related factor 1 OS=Homo sapiens GN=NFE2L1 PE=1 SV=1 (Range: 1-104)
PDB1018 50-453 -78.100 15  2fgt_A mol:protein length:417 Two-component system yycF/yycG regulatory protein yycH
PfamA32U 14-453 -95.500 21  PF07435.11; Q8YA70_LISMO/5-440; YycH protein
SCOP207 1-55 -4.960 13  d3jbre_ f.63.1.1 (E:) L-type calcium channel Gamma-1 subunit {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
VFDB 11-453 -99.300 16  [S] COG4863 Uncharacterized protein conserved in bacteria


FFAS is supported by the NIH grant R01-GM087218-01
1 2 3 7 6 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A. The challenge of protein structure determination--lessons from structuralgenomics. Protein Sci. 2007 Nov;16(11):2472-82.