current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2876next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15922991|ref|NP_370525.1| chromosomal replication initiation protein (SAV0001) [Staphylococcus aureus subsp. aureus Mu50] 453 CSGID 2-451 -132.000 61  IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames]
2 gi|15922992|ref|NP_370526.1| DNA polymerase III subunit beta (SAV0002) [Staphylococcus aureus subsp. aureus Mu50] 377 CSGID 2-377 -108.000 53  IDP04571 DNA polymerase III subunit beta [Bacillus anthracis str. Sterne] BAS0002 [Bacillus anthracis str. Sterne]
3 gi|15922993|ref|NP_370527.1| hypothetical protein (SAV0003) [Staphylococcus aureus subsp. aureus Mu50] 81 CSGID 4-69 -24.700 18  IDP90550 gene: rpsD; 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1594 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
4 gi|15922994|ref|NP_370528.1| recombination protein F (SAV0004) [Staphylococcus aureus subsp. aureus Mu50] 370 CSGID 1-370 -104.000 23  IDP00109 gene: recF; Rec protein NT01SF4517 [Shigella flexneri 2a str. 2457T]
5 gi|15922995|ref|NP_370529.1| DNA gyrase subunit B (SAV0005) [Staphylococcus aureus subsp. aureus Mu50] 644 CSGID 5-644 -202.000 69  IDP04572 DNA gyrase subunit B [Bacillus anthracis str. Sterne] BAS0005 [Bacillus anthracis str. Sterne]
6 gi|15922996|ref|NP_370530.1| DNA gyrase subunit A (SAV0006) [Staphylococcus aureus subsp. aureus Mu50] 889 CSGID 1-889 -178.000 99  IDP91874 gene: gyrA; DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315] SA0006 [Staphylococcus aureus subsp. aureus N315]
7 gi|15922997|ref|NP_370531.1| hypothetical protein (SAV0007) [Staphylococcus aureus subsp. aureus Mu50] 276 CSGID 2-276 -73.500 28  IDP02117 gene: yjeF; hypothetical protein STM4356 [Salmonella typhimurium LT2] STM4356 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
8 gi|161375866|ref|NP_370532.2| histidine ammonia-lyase (SAV0008) [Staphylococcus aureus subsp. aureus Mu50] 504 CSGID 3-503 -138.000 62  IDP01218 Histidine ammonia-lyase (Histidase) BA_3712 [Bacillus anthracis str. Ames]
9 gi|15922999|ref|NP_370533.1| seryl-tRNA synthetase (SAV0009) [Staphylococcus aureus subsp. aureus Mu50] 428 CSGID 1-428 -132.000 99  IDP05331 gene: serS; seryl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL0009 [Staphylococcus aureus subsp. aureus COL]
10 gi|15923000|ref|NP_370534.1| hypothetical protein (SAV0010) [Staphylococcus aureus subsp. aureus Mu50] 231 CSGID 57-229 -6.980 10  IDP91946 integral membrane protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100004617 [Streptococcus pneumoniae str. Canada MDR_19A]
11 gi|15923001|ref|NP_370535.1|(removed signalp:1-29) hypothetical protein (SAV0011) [Staphylococcus aureus subsp. aureus Mu50] 80 CSGID 1-44 -5.960 20  IDP05521 putative cell surface protein [Clostridium difficile 630] CD1858 [Peptoclostridium difficile 630]
12 gi|15923002|ref|NP_370536.1| putative homoserine-o-acetyltransferase (SAV0012) [Staphylococcus aureus subsp. aureus Mu50] 329 CSGID 8-327 -98.300 20  IDP01610 homoserine O-acetyltransferase [Bacillus anthracis str. `Ames Ancestor`] GBAA4983 [Bacillus anthracis str. `Ames Ancestor`]
13 gi|15923003|ref|NP_370537.1| hypothetical protein (SAV0013) [Staphylococcus aureus subsp. aureus Mu50] 331 CSGID 10-82 -8.150 23  IDP01790 gene: obgE; GTPase ObgE [Francisella tularensis subsp. tularensis SCHU S4] FTT1731c [Francisella tularensis subsp. tularensis SCHU S4]
14 gi|15923004|ref|NP_370538.1|(removed signalp:1-32) hypothetical protein (SAV0014) [Staphylococcus aureus subsp. aureus Mu50] 623 CSGID 28-270 -13.800 14  IDP04188 sensory box/GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961] VCA0939 [Vibrio cholerae O1 biovar El Tor str. N16961]
30-554 -12.700 11  IDP90964 Sensory box/GGDEF family protein VC0072 [Vibrio cholerae]
81-604 -11.200 11  IDP90960 C-di-GMP phosphodiesterase A-related protein VC0658 [Vibrio cholerae]
15 gi|15923005|ref|NP_370539.1| 50S ribosomal protein L9 (SAV0015) [Staphylococcus aureus subsp. aureus Mu50] 148 CSGID 1-148 -81.000 57  IDP04628 50S ribosomal protein L9 [Bacillus anthracis str. Sterne] BAS5322 [Bacillus anthracis str. Sterne]
16 gi|15923006|ref|NP_370540.1| replicative DNA helicase (SAV0016) [Staphylococcus aureus subsp. aureus Mu50] 466 CSGID 1-465 -129.000 58  IDP04627 replicative DNA helicase [Bacillus anthracis str. Sterne] BAS5321 [Bacillus anthracis str. Sterne]
17 gi|15923007|ref|NP_370541.1| adenylosuccinate synthetase (SAV0017) [Staphylococcus aureus subsp. aureus Mu50] 427 CSGID 1-427 -137.000 71  IDP01765 gene: purA; adenylosuccinate synthetase [Bacillus anthracis str. `Ames Ancestor`] GBAA5716 [Bacillus anthracis str. `Ames Ancestor`]
18 gi|15923008|ref|NP_370542.1| response regulator (SAV0018) [Staphylococcus aureus subsp. aureus Mu50] 235 CSGID 3-233 -105.000 41  IDP91043 gene: vanRG; response regulator [Enterococcus faecalis] EFE0003 [Enterococcus faecalis]
19 gi|15923009|ref|NP_370543.1| two-component sensor histidine kinase (SAV0019) [Staphylococcus aureus subsp. aureus Mu50] 608 CSGID 1-607 -136.000 46  IDP04694 gene: yycG; sensory box histidine kinase YycG [Bacillus anthracis str. `Ames Ancestor`] GBAA5714 [Bacillus anthracis str. `Ames Ancestor`]
20 gi|15923010|ref|NP_370544.1| hypothetical protein (SAV0020) [Staphylococcus aureus subsp. aureus Mu50] 453 CSGID 11-450 -24.400 13  IDP01153 yycI protein BA_5712 [Bacillus anthracis str. Ames]

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 6 3 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.