current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4946next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16758994|ref|NP_454611.1| thr operon leader peptide (STY0001) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 21 CSGID 2-21 -3.590 25  IDP91738 Q5YB85_STRSG [Streptococcus sp. `group G`]
2 gi|16758995|ref|NP_454612.1| bifunctional aspartokinase I/homeserine dehydrogenase I (STY0002) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 820 CSGID 1-817 -212.000 30  IDP00585 gene: metL; bifunctional aspartate kinase II/homoserine dehydrogenase II YPO0116 [Yersinia pestis CO92]
3 gi|16758996|ref|NP_454613.1| homoserine kinase (STY0003) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 309 CSGID 2-308 -85.400 24  IDP90702 gene: thrB; homoserine kinase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0134 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
4 gi|16758997|ref|NP_454614.1| threonine synthase (STY0004) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 428 CSGID 1-428 -125.000 99  IDP00901 gene: thrC; threonine synthase STM0004 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
5 gi|16758998|ref|NP_454615.1| hypothetical protein (STY0005) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 257 CSGID 1-257 -109.000 68  IDP91427 hypothetical protein VV1_0535 [Vibrio vulnificus CMCP6] VV1_0535 [Vibrio vulnificus CMCP6]
6 gi|16758999|ref|NP_454616.1| putative amino-acid transport protein (STY0006) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 476 CSGID 1-476 -135.000 51  IDP91426 Na+/alanine symporter [Vibrio vulnificus CMCP6] VV1_0536 [Vibrio vulnificus CMCP6]
7 gi|16759000|ref|NP_454617.1| transaldolase B (STY0007) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 317 CSGID 1-317 -98.500 48  IDP02095 gene: talA; transaldolase B [Francisella tularensis subsp. tularensis SCHU S4] FTT1093c [Francisella tularensis subsp. tularensis SCHU S4]
8 gi|16759001|ref|NP_454618.1| molybdenum cofactor biosynthesis protein MogA (STY0008) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 196 CSGID 1-188 -72.300 50  IDP06143 gene: mogA; molybdenum cofactor biosynthesis protein MogA [Helicobacter pylori J99] NP_223453 [Helicobacter pylori J99]
9 gi|16759002|ref|NP_454619.1| hypothetical protein (STY0009) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 188 CSGID 3-188 -95.100 64  IDP91444 hypothetical protein VV1_0416 [Vibrio vulnificus CMCP6] VV1_0416 [Vibrio vulnificus CMCP6]
10 gi|16759003|ref|NP_454620.1| hypothetical protein (STY0010) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 237 CSGID 5-136 -5.950 15  IDP04265 putative cell division protein DivIVA [Clostridium perfringens ATCC 13124] CPF_2105 [Clostridium perfringens ATCC 13124]
11 gi|16759004|ref|NP_454621.1|(removed signalp:1-23) hypothetical protein (STY0011) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 111 CSGID 30-111 -6.550 13  IDP91909 cell wall surface anchor family protein, partial [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100002785 [Streptococcus pneumoniae str. Canada MDR_19A]
12 gi|16759005|ref|NP_454622.1| molecular chaperone DnaK (STY0012) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 638 CSGID 1-638 -173.000 73  IDP02393 gene: dnaK; heat shock protein DnaK [Francisella tularensis subsp. tularensis SCHU S4] FTT1269c [Francisella tularensis subsp. tularensis SCHU S4]
13 gi|16759006|ref|NP_454623.1| chaperone protein DnaJ (STY0013) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 379 CSGID 1-379 -130.000 87  IDP00478 gene: dnaJ; chaperone protein DnaJ YPO0469 [Yersinia pestis CO92]
14 gi|16759007|ref|NP_454624.1| putative regulatory protein (STY0014) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 315 CSGID 10-313 -43.100 13  IDP00586 gene: metR; lysR-family transcriptional regulatory protein YPO3789 [Yersinia pestis CO92]
15 gi|16759008|ref|NP_454625.1| hypothetical protein (STY0015) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 114 CSGID 1-114 -6.100 IDP92689 hypothetical protein SAVC_09040 [Staphylococcus aureus subsp. aureus VC40] YP_005291395 [Staphylococcus aureus subsp. aureus VC40]
16 gi|16759009|ref|NP_454626.1| hypothetical protein (STY0016) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 177 CSGID 65-136 -10.100 13  IDP05636 putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile 630] CD2388 [Peptoclostridium difficile 630]
17 gi|16759010|ref|NP_454627.1| hypothetical protein (STY0017) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 147 CSGID 1-147 -64.000 99  IDP01845 hypothetical protein STM0017 [Salmonella typhimurium LT2] STM0017 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
18 gi|16759011|ref|NP_454628.1| putative chitinase (STY0018) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 699 CSGID 34-697 -107.000 18  IDP05654 hypothetical protein lmo0105 [Listeria monocytogenes EGD-e] lmo0105 [Listeria monocytogenes EGD-e]
19 gi|16759012|ref|NP_454629.1| hypothetical protein (STY0019) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 383 CSGID 127-380 -6.200 IDP05515 putative lipoprotein [Clostridium difficile 630] CD1687 [Peptoclostridium difficile 630]
20 gi|16759013|ref|NP_454630.1| hypothetical protein (STY0020) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 620 CSGID 365-456 -7.150 13  IDP91345 transposase [Vibrio vulnificus CMCP6] VV1_3181 [Vibrio vulnificus CMCP6]


FFAS is supported by the NIH grant R01-GM087218-01
1 2 5 3 1 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.