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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4946next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16758994|ref|NP_454611.1| thr operon leader peptide (STY0001) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 21 PDB1018 2-14 -3.120 38  2na6_A mol:protein length:28 Tumor necrosis factor receptor superfamily member 6
2 gi|16758995|ref|NP_454612.1| bifunctional aspartokinase I/homeserine dehydrogenase I (STY0002) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 820 PDB1018 1-465 -115.000 35  3c1m_A mol:protein length:473 Probable aspartokinase
462-817 -77.900 30  1q7g_A mol:protein length:359 Homoserine dehydrogenase
3 gi|16758996|ref|NP_454613.1| homoserine kinase (STY0003) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 309 PDB1018 1-309 -101.000 76  4rpf_A mol:protein length:310 Homoserine kinase
4 gi|16758997|ref|NP_454614.1| threonine synthase (STY0004) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 428 PDB1018 1-428 -118.000 93  1vb3_A mol:protein length:428 Threonine synthase
5 gi|16758998|ref|NP_454615.1| hypothetical protein (STY0005) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 257 PDB1018 1-257 -107.000 86  5caj_A mol:protein length:278 UPF0246 protein YaaA
6 gi|16758999|ref|NP_454616.1| putative amino-acid transport protein (STY0006) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 476 PDB1018 32-441 -11.900 14  5oqt_A mol:protein length:471 Amino acid transporter
52-431 -14.600 12  3gi8_C mol:protein length:444 Uncharacterized protein MJ0609
7 gi|16759000|ref|NP_454617.1| transaldolase B (STY0007) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 317 PDB1018 1-317 -102.000 94  3cwn_A mol:protein length:337 Transaldolase B
8 gi|16759001|ref|NP_454618.1| molybdenum cofactor biosynthesis protein MogA (STY0008) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 196 PDB1018 1-188 -72.600 50  4xcw_A mol:protein length:178 Molybdopterin adenylyltransferase
9 gi|16759002|ref|NP_454619.1| hypothetical protein (STY0009) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 188 PDB1018 1-187 -98.100 95  5ys3_A mol:protein length:192 Succinate-Acetate Permease
10 gi|16759003|ref|NP_454620.1| hypothetical protein (STY0010) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 237 PDB1018 78-133 -7.920 16  5iy6_N mol:protein length:376 Transcription initiation factor IIA subunit 1
11 gi|16759004|ref|NP_454621.1|(removed signalp:1-23) hypothetical protein (STY0011) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 111 PDB1018 40-111 -7.890 11  1mt7_A mol:protein length:99 PROTEASE RETROPEPSIN
12 gi|16759005|ref|NP_454622.1| molecular chaperone DnaK (STY0012) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 638 PDB1018 1-605 -170.000 96  5nro_A mol:protein length:611 Chaperone protein DnaK
2-635 -157.000 47  5fpn_A mol:protein length:640 HEAT SHOCK-RELATED 70 KDA PROTEIN 2
13 gi|16759006|ref|NP_454623.1| chaperone protein DnaJ (STY0013) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 379 PDB1018 1-359 -96.100 40  3lz8_A mol:protein length:329 Putative chaperone DnaJ
14 gi|16759007|ref|NP_454624.1| putative regulatory protein (STY0014) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 315 PDB1018 3-313 -92.800 19  1utb_A mol:protein length:315 LYSR-TYPE REGULATORY PROTEIN
15 gi|16759008|ref|NP_454625.1| hypothetical protein (STY0015) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 114 PDB1018 17-94 -9.620 12  5kbn_A mol:protein length:147 Putative fluoride ion transporter CrcB
16 gi|16759009|ref|NP_454626.1| hypothetical protein (STY0016) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 177 PDB1018 1-177 -82.600 34  2is5_A mol:protein length:166 Hypothetical protein
17 gi|16759010|ref|NP_454627.1| hypothetical protein (STY0017) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 147 PDB1018 8-107 -32.700 16  5ju7_A mol:protein length:110 Transcriptional activator CadC
17-139 -15.000 12  2fez_A mol:protein length:388 Probable regulatory protein embR
18 gi|16759011|ref|NP_454628.1| putative chitinase (STY0018) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 699 PDB1018 7-698 -102.000 24  5zl9_A mol:protein length:618 Chitinase AB
19 gi|16759012|ref|NP_454629.1| hypothetical protein (STY0019) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 383 PDB1018 342-383 -7.240 14  4myp_A mol:protein length:122 Iron-regulated surface determinant protein A
20 gi|16759013|ref|NP_454630.1| hypothetical protein (STY0020) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 620 PDB1018 197-510 -13.500 12  4a05_A mol:protein length:364 CELLOBIOHYDROLASE FAMILY 6
254-616 -13.400 11  4avn_A mol:protein length:420 CELLOBIOHYDROLASE. GLYCOSYL HYDROLASE FAMILY 6


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.