FFAS03 list of results S.typhi / PfamA30U

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4946 next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16758994|ref|NP_454611.1| thr operon leader peptide (STY0001) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 21 PfamA30U 1-20 -3.150 25 PF12537.6; Q0UJI5_PHANO/200-267; The Golgi pH Regulator (GPHR) Family N-terminal
2 gi|16758995|ref|NP_454612.1| bifunctional aspartokinase I/homeserine dehydrogenase I (STY0002) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 820 PfamA30U 614-811 -29.700 28 PF00742.17; R5EAW4_9BURK/138-316; Homoserine dehydrogenase
3 gi|16758996|ref|NP_454613.1| homoserine kinase (STY0003) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 309 PfamA30U 83-150 -13.100 25 PF00288.24; ISPE_BACSU/86-144; GHMP kinases N terminal domain
4 gi|16758997|ref|NP_454614.1| threonine synthase (STY0004) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 428 PfamA30U 2-80 -35.800 31 PF14821.4; Q21LF7_SACD2/2-80; Threonine synthase N terminus
5 gi|16758998|ref|NP_454615.1| hypothetical protein (STY0005) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 257 PfamA30U 1-243 -124.000 58 PF03883.12; D4ZH13_SHEVD/1-244; Peroxide stress protein YaaA
6 gi|16758999|ref|NP_454616.1| putative amino-acid transport protein (STY0006) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 476 PfamA30U 47-453 -118.000 47 PF01235.15; C5DAE3_GEOSW/49-446; Sodium:alanine symporter family
7 gi|16759000|ref|NP_454617.1| transaldolase B (STY0007) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 317 PfamA30U 14-313 -144.000 58 PF00923.17; Q966C7_CAEEL/13-315; Transaldolase/Fructose-6-phosphate aldolase
8 gi|16759001|ref|NP_454618.1| molybdenum cofactor biosynthesis protein MogA (STY0008) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 196 PfamA30U 8-144 -17.200 21 PF00994.22; CINAL_DESPS/4-169; Probable molybdopterin binding domain
9 gi|16759002|ref|NP_454619.1| hypothetical protein (STY0009) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 188 PfamA30U 3-187 -88.900 31 PF01184.17; A7TND9_VANPO/71-277; GPR1/FUN34/yaaH family
10 gi|16759003|ref|NP_454620.1| hypothetical protein (STY0010) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 237 PfamA30U 5-38 -9.960 32 PF13099.4; E3D0J1_9BACT/3-37; Domain of unknown function (DUF3944 topsan)
11 gi|16759004|ref|NP_454621.1|(removed signalp:1-23) hypothetical protein (STY0011) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 111 PfamA30U 1-109 -53.600 78 PF10807.6; A6T4F3_KLEP7/3-132; Protein of unknown function (DUF2541 topsan)
12 gi|16759005|ref|NP_454622.1| molecular chaperone DnaK (STY0012) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 638 PfamA30U 4-604 -202.000 62 PF00012.18; HSP7E_DROME/54-653; Hsp70 protein
13 gi|16759006|ref|NP_454623.1| chaperone protein DnaJ (STY0013) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 379 PfamA30U 5-67 -39.200 55 PF00226.29; Q22028_CAEEL/17-79; DnaJ domain
120-333 -84.700 34 PF01556.16; T0NBZ6_9EURY/129-343; DnaJ C terminal domain
14 gi|16759007|ref|NP_454624.1| putative regulatory protein (STY0014) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 315 PfamA30U 16-70 -10.900 20 PF00126.25; Q8EIK0_SHEON/8-63; Bacterial regulatory helix-turn-helix protein, lysR family
15 gi|16759008|ref|NP_454625.1| hypothetical protein (STY0015) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 114 PfamA30U 5-107 -17.600 8 PF05106.10; A6VNP3_ACTSZ/5-105; Phage holin family (Lysis protein S)
16 gi|16759009|ref|NP_454626.1| hypothetical protein (STY0016) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 177 PfamA30U 5-88 -50.500 38 PF05838.10; S5YCL9_PARAH/8-97; Glycosyl hydrolase 108
91-176 -33.900 23 PF09374.8; Q8EDS2_SHEON/119-186; Predicted Peptidoglycan domain
17 gi|16759010|ref|NP_454627.1| hypothetical protein (STY0017) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 147 PfamA30U 25-102 -23.000 14 PF00486.26; I0DPC2_PROSM/145-220; Transcriptional regulatory protein, C terminal
18 gi|16759011|ref|NP_454628.1| putative chitinase (STY0018) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 699 PfamA30U 54-465 -94.000 27 PF00704.26; Q9WFU7_9ABAC/160-544; Glycosyl hydrolases family 18
651-693 -16.000 20 PF02839.12; Q2SNL2_HAHCH/28-71; Carbohydrate binding domain
19 gi|16759012|ref|NP_454629.1| hypothetical protein (STY0019) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 383 PfamA30U 331-381 -10.000 19 PF14686.4; A1CNA7_ASPCL/148-225; Polysaccharide lyase family 4, domain II
20 gi|16759013|ref|NP_454630.1| hypothetical protein (STY0020) [Salmonella enterica subsp. enterica serovar Typhi str. CT18] 620 PfamA30U 252-508 -10.200 10 PF01341.15; G2XB72_VERDV/142-445; Glycosyl hydrolases family 6

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

Comments and questions to: webmaster

#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|16758994\|ref\|NP_454611.1\| thr operon leader peptide (STY0001) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`21`	`PfamA30U`	`1-20`	`-3.150`	`25`	`PF12537.6; Q0UJI5_PHANO/200-267; The Golgi pH Regulator (GPHR) Family N-terminal`
2	`gi\|16758995\|ref\|NP_454612.1\| bifunctional aspartokinase I/homeserine dehydrogenase I (STY0002) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`820`	`PfamA30U`	`614-811`	`-29.700`	`28`	`PF00742.17; R5EAW4_9BURK/138-316; Homoserine dehydrogenase`
3	`gi\|16758996\|ref\|NP_454613.1\| homoserine kinase (STY0003) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`309`	`PfamA30U`	`83-150`	`-13.100`	`25`	`PF00288.24; ISPE_BACSU/86-144; GHMP kinases N terminal domain`
4	`gi\|16758997\|ref\|NP_454614.1\| threonine synthase (STY0004) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`428`	`PfamA30U`	`2-80`	`-35.800`	`31`	`PF14821.4; Q21LF7_SACD2/2-80; Threonine synthase N terminus`
5	`gi\|16758998\|ref\|NP_454615.1\| hypothetical protein (STY0005) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`257`	`PfamA30U`	`1-243`	`-124.000`	`58`	`PF03883.12; D4ZH13_SHEVD/1-244; Peroxide stress protein YaaA`
6	`gi\|16758999\|ref\|NP_454616.1\| putative amino-acid transport protein (STY0006) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`476`	`PfamA30U`	`47-453`	`-118.000`	`47`	`PF01235.15; C5DAE3_GEOSW/49-446; Sodium:alanine symporter family`
7	`gi\|16759000\|ref\|NP_454617.1\| transaldolase B (STY0007) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`317`	`PfamA30U`	`14-313`	`-144.000`	`58`	`PF00923.17; Q966C7_CAEEL/13-315; Transaldolase/Fructose-6-phosphate aldolase`
8	`gi\|16759001\|ref\|NP_454618.1\| molybdenum cofactor biosynthesis protein MogA (STY0008) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`196`	`PfamA30U`	`8-144`	`-17.200`	`21`	`PF00994.22; CINAL_DESPS/4-169; Probable molybdopterin binding domain`
9	`gi\|16759002\|ref\|NP_454619.1\| hypothetical protein (STY0009) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`188`	`PfamA30U`	`3-187`	`-88.900`	`31`	`PF01184.17; A7TND9_VANPO/71-277; GPR1/FUN34/yaaH family`
10	`gi\|16759003\|ref\|NP_454620.1\| hypothetical protein (STY0010) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`237`	`PfamA30U`	`5-38`	`-9.960`	`32`	`PF13099.4; E3D0J1_9BACT/3-37; Domain of unknown function (DUF3944 topsan)`
11	`gi\|16759004\|ref\|NP_454621.1\|(removed signalp:1-23) hypothetical protein (STY0011) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`111`	`PfamA30U`	`1-109`	`-53.600`	`78`	`PF10807.6; A6T4F3_KLEP7/3-132; Protein of unknown function (DUF2541 topsan)`
12	`gi\|16759005\|ref\|NP_454622.1\| molecular chaperone DnaK (STY0012) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`638`	`PfamA30U`	`4-604`	`-202.000`	`62`	`PF00012.18; HSP7E_DROME/54-653; Hsp70 protein`
13	`gi\|16759006\|ref\|NP_454623.1\| chaperone protein DnaJ (STY0013) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`379`	`PfamA30U`	`5-67`	`-39.200`	`55`	`PF00226.29; Q22028_CAEEL/17-79; DnaJ domain`
				`120-333`	`-84.700`	`34`	`PF01556.16; T0NBZ6_9EURY/129-343; DnaJ C terminal domain`
14	`gi\|16759007\|ref\|NP_454624.1\| putative regulatory protein (STY0014) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`315`	`PfamA30U`	`16-70`	`-10.900`	`20`	`PF00126.25; Q8EIK0_SHEON/8-63; Bacterial regulatory helix-turn-helix protein, lysR family`
15	`gi\|16759008\|ref\|NP_454625.1\| hypothetical protein (STY0015) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`114`	`PfamA30U`	`5-107`	`-17.600`	`8`	`PF05106.10; A6VNP3_ACTSZ/5-105; Phage holin family (Lysis protein S)`
16	`gi\|16759009\|ref\|NP_454626.1\| hypothetical protein (STY0016) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`177`	`PfamA30U`	`5-88`	`-50.500`	`38`	`PF05838.10; S5YCL9_PARAH/8-97; Glycosyl hydrolase 108`
				`91-176`	`-33.900`	`23`	`PF09374.8; Q8EDS2_SHEON/119-186; Predicted Peptidoglycan domain`
17	`gi\|16759010\|ref\|NP_454627.1\| hypothetical protein (STY0017) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`147`	`PfamA30U`	`25-102`	`-23.000`	`14`	`PF00486.26; I0DPC2_PROSM/145-220; Transcriptional regulatory protein, C terminal`
18	`gi\|16759011\|ref\|NP_454628.1\| putative chitinase (STY0018) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`699`	`PfamA30U`	`54-465`	`-94.000`	`27`	`PF00704.26; Q9WFU7_9ABAC/160-544; Glycosyl hydrolases family 18`
				`651-693`	`-16.000`	`20`	`PF02839.12; Q2SNL2_HAHCH/28-71; Carbohydrate binding domain`
19	`gi\|16759012\|ref\|NP_454629.1\| hypothetical protein (STY0019) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`383`	`PfamA30U`	`331-381`	`-10.000`	`19`	`PF14686.4; A1CNA7_ASPCL/148-225; Polysaccharide lyase family 4, domain II`
20	`gi\|16759013\|ref\|NP_454630.1\| hypothetical protein (STY0020) [Salmonella enterica subsp. enterica serovar Typhi str. CT18]`	`620`	`PfamA30U`	`252-508`	`-10.200`	`10`	`PF01341.15; G2XB72_VERDV/142-445; Glycosyl hydrolases family 6`