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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4725next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16763391|ref|NP_459006.1| thr operon leader peptide (STM0001) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-21) 21 COG1018 1-20 -2.280 30  [T] KOG2417 Predicted G-protein coupled receptor
2 gi|16763392|ref|NP_459007.1| bifunctional aspartokinase I/homoserine dehydrogenase I (STM0002) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-820) 820 COG1018 1-481 -113.000 26  [E] COG0527 Aspartokinases
456-820 -83.000 68  [E] COG0460 Homoserine dehydrogenase
3 gi|16763393|ref|NP_459008.1| homoserine kinase (STM0003) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-309) 309 COG1018 2-309 -96.900 70  [E] COG0083 Homoserine kinase
4 gi|16763394|ref|NP_459009.1| threonine synthase (STM0004) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-428) 428 COG1018 1-427 -103.000 27  [E] COG0498 Threonine synthase
5 gi|16763395|ref|NP_459010.1| hypothetical protein (STM0005) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-257) 257 COG1018 1-257 -110.000 86  [S] COG3022 Uncharacterized protein conserved in bacteria
6 gi|16763396|ref|NP_459011.1| alanine/glycine transport protein (STM0006) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-476) 476 COG1018 1-471 -123.000 43  [E] COG1115 Na+/alanine symporter
7 gi|16763397|ref|NP_459012.1| transaldolase B (STM0007) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-317) 317 COG1018 1-317 -104.000 87  [G] COG0176 Transaldolase
8 gi|16763398|ref|NP_459013.1| molybdenum cofactor biosynthesis protein MogA (STM0008) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-196) 196 COG1018 2-191 -69.200 74  [H] COG0521 Molybdopterin biosynthesis enzymes
9 gi|16763399|ref|NP_459014.1| hypothetical protein (STM0009) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-188) 188 COG1018 3-184 -91.400 65  [S] COG1584 Predicted membrane protein
10 gi|16763400|ref|NP_459015.1| hypothetical protein (STM0010) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-237) 237 COG1018 1-237 -81.000 87  [S] COG4735 Uncharacterized protein conserved in bacteria
11 gi|16763401|ref|NP_459016.1|(removed signalp:1-23) hypothetical protein (STM0011) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 24-134) 111 COG1018 2-111 -6.770 [S] COG4425 Predicted membrane protein
12 gi|16763402|ref|NP_459017.1| molecular chaperone DnaK (STM0012) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-638) 638 COG1018 1-638 -163.000 56  [O] COG0443 Molecular chaperone
13 gi|16763403|ref|NP_459018.1| chaperone protein DnaJ (STM0013) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-379) 379 COG1018 1-375 -124.000 58  [O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain
14 gi|16763404|ref|NP_459019.1| transcriptional regulator (STM0014) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-315) 315 COG1018 7-313 -31.100 13  [K] COG0583 Transcriptional regulator
15 gi|16763405|ref|NP_459020.1| bacteriophage protein (STM0015) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-114) 114 COG1018 18-94 -10.200 13  [D] COG0239 Integral membrane protein possibly involved in chromosome condensation
16 gi|16763406|ref|NP_459021.1| hypothetical protein (STM0016) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-177) 177 COG1018 1-177 -75.000 25  [R] COG3926 Putative secretion activating protein
17 gi|16763407|ref|NP_459022.1| hypothetical protein (STM0017) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-147) 147 COG1018 2-140 -42.900 15  [K] COG3710 DNA-binding winged-HTH domains
18 gi|16763408|ref|NP_459023.1| exochitinase (STM0018) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-699) 699 COG1018 1-512 -123.000 100  [G] COG3325 Chitinase
30-699 -31.900 [R] COG3858 Predicted glycosyl hydrolase
19 gi|16763409|ref|NP_459024.1| hydroxymethyltransferase (STM0019) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-998) 998 COG1018 1-564 -9.900 11  [M] COG4932 Predicted outer membrane protein
20 gi|16763410|ref|NP_459025.1| cytoplasmic protein (STM0020) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-234) 234 COG1018 4-233 -15.200 [T] KOG1113 cAMP-dependent protein kinase types I and II, regulatory subunit
44-228 -33.800 12  [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.