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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4725next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16763391|ref|NP_459006.1| thr operon leader peptide (STM0001) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-21) 21 CSGID 2-21 -3.590 25  IDP91738 Q5YB85_STRSG [Streptococcus sp. `group G`]
2 gi|16763392|ref|NP_459007.1| bifunctional aspartokinase I/homoserine dehydrogenase I (STM0002) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-820) 820 CSGID 1-817 -212.000 29  IDP00585 gene: metL; bifunctional aspartate kinase II/homoserine dehydrogenase II YPO0116 [Yersinia pestis CO92]
3 gi|16763393|ref|NP_459008.1| homoserine kinase (STM0003) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-309) 309 CSGID 2-308 -85.400 24  IDP90702 gene: thrB; homoserine kinase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0134 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
4 gi|16763394|ref|NP_459009.1| threonine synthase (STM0004) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-428) 428 CSGID 1-428 -126.000 100  IDP00901 gene: thrC; threonine synthase STM0004 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
5 gi|16763395|ref|NP_459010.1| hypothetical protein (STM0005) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-257) 257 CSGID 1-257 -109.000 67  IDP91427 hypothetical protein VV1_0535 [Vibrio vulnificus CMCP6] VV1_0535 [Vibrio vulnificus CMCP6]
6 gi|16763396|ref|NP_459011.1| alanine/glycine transport protein (STM0006) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-476) 476 CSGID 1-476 -134.000 51  IDP91426 Na+/alanine symporter [Vibrio vulnificus CMCP6] VV1_0536 [Vibrio vulnificus CMCP6]
7 gi|16763397|ref|NP_459012.1| transaldolase B (STM0007) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-317) 317 CSGID 1-317 -98.500 48  IDP02095 gene: talA; transaldolase B [Francisella tularensis subsp. tularensis SCHU S4] FTT1093c [Francisella tularensis subsp. tularensis SCHU S4]
8 gi|16763398|ref|NP_459013.1| molybdenum cofactor biosynthesis protein MogA (STM0008) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-196) 196 CSGID 1-188 -67.700 50  IDP06143 gene: mogA; molybdenum cofactor biosynthesis protein MogA [Helicobacter pylori J99] NP_223453 [Helicobacter pylori J99]
9 gi|16763399|ref|NP_459014.1| hypothetical protein (STM0009) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-188) 188 CSGID 3-188 -95.100 64  IDP91444 hypothetical protein VV1_0416 [Vibrio vulnificus CMCP6] VV1_0416 [Vibrio vulnificus CMCP6]
10 gi|16763400|ref|NP_459015.1| hypothetical protein (STM0010) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-237) 237 CSGID 5-136 -5.950 15  IDP04265 putative cell division protein DivIVA [Clostridium perfringens ATCC 13124] CPF_2105 [Clostridium perfringens ATCC 13124]
11 gi|16763401|ref|NP_459016.1|(removed signalp:1-23) hypothetical protein (STM0011) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 24-134) 111 CSGID 30-111 -6.650 13  IDP91909 cell wall surface anchor family protein, partial [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100002785 [Streptococcus pneumoniae str. Canada MDR_19A]
12 gi|16763402|ref|NP_459017.1| molecular chaperone DnaK (STM0012) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-638) 638 CSGID 1-638 -172.000 73  IDP02646 gene: dnaK; chaperone protein dnak [Coxiella burnetii RSA 493] CBU_1290 [Coxiella burnetii RSA 493]
13 gi|16763403|ref|NP_459018.1| chaperone protein DnaJ (STM0013) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-379) 379 CSGID 1-379 -130.000 87  IDP00478 gene: dnaJ; chaperone protein DnaJ YPO0469 [Yersinia pestis CO92]
14 gi|16763404|ref|NP_459019.1| transcriptional regulator (STM0014) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-315) 315 CSGID 10-313 -42.700 13  IDP00586 gene: metR; lysR-family transcriptional regulatory protein YPO3789 [Yersinia pestis CO92]
15 gi|16763405|ref|NP_459020.1| bacteriophage protein (STM0015) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-114) 114 CSGID 77-103 -6.130 25  IDP02042 gene: asd; aspartate-semialdehyde dehydrogenase [Coxiella burnetii RSA 493] CBU_0875 [Coxiella burnetii RSA 493]
16 gi|16763406|ref|NP_459021.1| hypothetical protein (STM0016) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-177) 177 CSGID 65-136 -10.100 13  IDP05636 putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile 630] CD2388 [Peptoclostridium difficile 630]
17 gi|16763407|ref|NP_459022.1| hypothetical protein (STM0017) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-147) 147 CSGID 1-147 -64.100 100  IDP01845 hypothetical protein STM0017 [Salmonella typhimurium LT2] STM0017 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
18 gi|16763408|ref|NP_459023.1| exochitinase (STM0018) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-699) 699 CSGID 2-490 -86.600 20  IDP05198 putative bifunctional protein: peroxiredoxin/chitinase [Clostridium difficile 630] CD1433 [Peptoclostridium difficile 630]
36-697 -108.000 18  IDP05654 hypothetical protein lmo0105 [Listeria monocytogenes EGD-e] lmo0105 [Listeria monocytogenes EGD-e]
19 gi|16763409|ref|NP_459024.1| hydroxymethyltransferase (STM0019) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-998) 998 CSGID 1-566 -12.300 IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
1-770 -9.520 IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]
20 gi|16763410|ref|NP_459025.1| cytoplasmic protein (STM0020) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-234) 234 CSGID 34-228 -47.500 17  IDP91810 gene: crp; DNA-binding transcriptional dual regulator [Escherichia coli str. K-12 substr. MG1655] b3357 [Escherichia coli str. K-12 substr. MG1655]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.