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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 4724< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 gi|16763411|ref|NP_459026.1|(removed signalp:1-24) fimbrial subunit (STM0021) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 25-180) 156 HGM_OVER 27-149 -4.150 PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;
22 gi|16763412|ref|NP_459027.1|(removed signalp:1-26) fimbrial chaperone (STM0022) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 27-228) 202 HGM_OVER 18-133 -4.570 HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;
23 gi|16763413|ref|NP_459028.1|(removed signalp:1-35) fimbrial usher (STM0023) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 36-873) 838 HGM_OVER 113-324 -3.240 11  PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)
24 gi|16763414|ref|NP_459029.1|(removed signalp:1-21) fimbrial subunit (STM0024) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 22-335) 314 HGM_OVER 166-314 -5.810 PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;
25 gi|16763415|ref|NP_459030.1|(removed signalp:1-23) fimbrial subunit (STM0025) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 24-181) 158 HGM_OVER 13-158 -6.150 PB009233 Q7MX23_PORGI/1-175 PB009233; Pfam-B_9233;
26 gi|16763416|ref|NP_459031.1|(removed signalp:1-20) fimbrial subunit (STM0026) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 21-172) 152 HGM_OVER 2-90 -4.090 HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;
27 gi|16763417|ref|NP_459032.1| fimbrial chaperone (STM0027) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-243) 243 HGM_OVER 10-150 -5.100 11  PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]
28 gi|16763418|ref|NP_459033.1|(removed signalp:1-27) thiol-disulfide isomerase (STM0028) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 28-281) 254 HGM_OVER 7-184 -5.090 PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
29 gi|39546288|ref|NP_945153.1| hypothetical protein (STM0028.1n) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-109) 109 HGM_OVER 10-109 -5.510 PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]
30 gi|16763419|ref|NP_459034.1| transcriptional regulator (STM0029) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-149) 149 HGM_OVER 1-107 -5.360 15  PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
31 gi|16763420|ref|NP_459035.1| transcriptional regulator (STM0030) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-334) 334 HGM_OVER 16-107 -3.560 15  PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]
32 gi|16763421|ref|NP_459036.1| transcriptional regulator (STM0031) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-146) 146 HGM_OVER 1-107 -5.770 12  PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
33 gi|16763422|ref|NP_459037.1| arylsulfatase (STM0032) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-572) 572 HGM_OVER 1-353 -5.500 PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]
34 gi|16763423|ref|NP_459038.1|(removed signalp:1-29) 5'-nucleotidase (STM0033) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 30-523) 494 HGM_OVER 288-432 -5.050 12  PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]
35 gi|16763424|ref|NP_459039.1|(removed signalp:1-24) outer membrane/exported protein (STM0034) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 25-253) 229 HGM_OVER 121-220 -5.070 11  PB019827 gi|67919427|ref|ZP_00513005.1| conserved hypothetical protein [Chlorobium limicola DSM 245]gi|67782966|gb|EAM42367.1| conserved hypothetical protein [Chlorobium limicola DSM 245]
36 gi|16763425|ref|NP_459040.1|(removed signalp:1-25) arylsulfatase (STM0035) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 26-497) 472 HGM_OVER 219-375 -3.880 PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
37 gi|16763426|ref|NP_459041.1| arylsulfatase regulator (STM0036) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-396) 396 HGM_OVER 1-44 -4.480 15  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
38 gi|16763427|ref|NP_459042.1| cytoplasmic protein (STM0037) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-417) 417 HGM_OVER 17-98 -7.490 17  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
39 gi|16763428|ref|NP_459043.1| arylsulfatase (STM0038) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-571) 571 HGM_OVER 1-353 -5.950 PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]
40 gi|16763429|ref|NP_459044.1| pH-dependent sodium/proton antiporter (STM0039) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-388) 388 HGM_OVER 74-156 -4.500 10  PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.