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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4725next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16763391|ref|NP_459006.1| thr operon leader peptide (STM0001) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-21) 21 PDB1018 2-14 -3.120 38  2na6_A mol:protein length:28 Tumor necrosis factor receptor superfamily member 6
2 gi|16763392|ref|NP_459007.1| bifunctional aspartokinase I/homoserine dehydrogenase I (STM0002) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-820) 820 PDB1018 1-465 -114.000 35  3c1m_A mol:protein length:473 Probable aspartokinase
462-817 -77.200 31  1q7g_A mol:protein length:359 Homoserine dehydrogenase
3 gi|16763393|ref|NP_459008.1| homoserine kinase (STM0003) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-309) 309 PDB1018 1-309 -101.000 76  4rpf_A mol:protein length:310 Homoserine kinase
4 gi|16763394|ref|NP_459009.1| threonine synthase (STM0004) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-428) 428 PDB1018 1-428 -118.000 93  1vb3_A mol:protein length:428 Threonine synthase
5 gi|16763395|ref|NP_459010.1| hypothetical protein (STM0005) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-257) 257 PDB1018 1-257 -107.000 86  5caj_A mol:protein length:278 UPF0246 protein YaaA
6 gi|16763396|ref|NP_459011.1| alanine/glycine transport protein (STM0006) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-476) 476 PDB1018 32-441 -11.800 14  5oqt_A mol:protein length:471 Amino acid transporter
52-431 -14.400 12  3gi8_C mol:protein length:444 Uncharacterized protein MJ0609
7 gi|16763397|ref|NP_459012.1| transaldolase B (STM0007) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-317) 317 PDB1018 1-317 -102.000 94  3cwn_A mol:protein length:337 Transaldolase B
8 gi|16763398|ref|NP_459013.1| molybdenum cofactor biosynthesis protein MogA (STM0008) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-196) 196 PDB1018 1-192 -69.800 91  1di6_A mol:protein length:195 MOLYBDENUM COFACTOR BIOSYNTHETIC ENZYME
9 gi|16763399|ref|NP_459014.1| hypothetical protein (STM0009) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-188) 188 PDB1018 1-187 -98.100 95  5ys3_A mol:protein length:192 Succinate-Acetate Permease
10 gi|16763400|ref|NP_459015.1| hypothetical protein (STM0010) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-237) 237 PDB1018 78-133 -7.920 16  5iy6_N mol:protein length:376 Transcription initiation factor IIA subunit 1
11 gi|16763401|ref|NP_459016.1|(removed signalp:1-23) hypothetical protein (STM0011) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 24-134) 111 PDB1018 40-111 -7.910 11  1mt7_A mol:protein length:99 PROTEASE RETROPEPSIN
12 gi|16763402|ref|NP_459017.1| molecular chaperone DnaK (STM0012) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-638) 638 PDB1018 1-605 -169.000 96  5nro_A mol:protein length:611 Chaperone protein DnaK
2-635 -156.000 47  5fpn_A mol:protein length:640 HEAT SHOCK-RELATED 70 KDA PROTEIN 2
13 gi|16763403|ref|NP_459018.1| chaperone protein DnaJ (STM0013) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-379) 379 PDB1018 1-359 -96.100 40  3lz8_A mol:protein length:329 Putative chaperone DnaJ
14 gi|16763404|ref|NP_459019.1| transcriptional regulator (STM0014) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-315) 315 PDB1018 3-313 -93.600 19  1utb_A mol:protein length:315 LYSR-TYPE REGULATORY PROTEIN
15 gi|16763405|ref|NP_459020.1| bacteriophage protein (STM0015) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-114) 114 PDB1018 17-94 -9.700 12  5kbn_A mol:protein length:147 Putative fluoride ion transporter CrcB
16 gi|16763406|ref|NP_459021.1| hypothetical protein (STM0016) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-177) 177 PDB1018 1-177 -82.800 34  2is5_A mol:protein length:166 Hypothetical protein
17 gi|16763407|ref|NP_459022.1| hypothetical protein (STM0017) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-147) 147 PDB1018 8-107 -32.900 16  5ju7_A mol:protein length:110 Transcriptional activator CadC
17-141 -15.100 10  2fez_A mol:protein length:388 Probable regulatory protein embR
18 gi|16763408|ref|NP_459023.1| exochitinase (STM0018) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-699) 699 PDB1018 7-698 -101.000 25  5zl9_A mol:protein length:618 Chitinase AB
19 gi|16763409|ref|NP_459024.1| hydroxymethyltransferase (STM0019) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-998) 998 PDB1018 633-994 -8.490 10  4avn_A mol:protein length:420 CELLOBIOHYDROLASE. GLYCOSYL HYDROLASE FAMILY 6
20 gi|16763410|ref|NP_459025.1| cytoplasmic protein (STM0020) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-234) 234 PDB1018 6-229 -48.500 12  3iwz_A mol:protein length:230 Catabolite activation-like protein


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.