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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4725next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16763391|ref|NP_459006.1| thr operon leader peptide (STM0001) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-21) 21 PfamA32U 1-20 -3.220 25  PF12537.8; Q0UJI5_PHANO/200-267; The Golgi pH Regulator (GPHR) Family N-terminal
2 gi|16763392|ref|NP_459007.1| bifunctional aspartokinase I/homoserine dehydrogenase I (STM0002) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-820) 820 PfamA32U 2-284 -12.400 16  PF00696.28; PROJ_BACSU/8-238; Amino acid kinase family
614-811 -38.100 27  PF00742.19; R5EAW4_9BURK/138-316; Homoserine dehydrogenase
3 gi|16763393|ref|NP_459008.1| homoserine kinase (STM0003) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-309) 309 PfamA32U 83-150 -23.000 23  PF00288.26; ISPE_BACSU/86-144; GHMP kinases N terminal domain
210-286 -11.100 14  PF08544.13; Q64T43_BACFR/846-929; GHMP kinases C terminal
4 gi|16763394|ref|NP_459009.1| threonine synthase (STM0004) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-428) 428 PfamA32U 2-80 -27.700 31  PF14821.6; Q21LF7_SACD2/2-80; Threonine synthase N terminus
92-375 -20.000 12  PF00291.25; A0Z504_9GAMM/17-322; Pyridoxal-phosphate dependent enzyme
5 gi|16763395|ref|NP_459010.1| hypothetical protein (STM0005) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-257) 257 PfamA32U 1-243 -102.000 58  PF03883.14; D4ZH13_SHEVD/1-244; Peroxide stress protein YaaA
6 gi|16763396|ref|NP_459011.1| alanine/glycine transport protein (STM0006) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-476) 476 PfamA32U 47-453 -109.000 47  PF01235.17; C5DAE3_GEOSW/49-446; Sodium:alanine symporter family
7 gi|16763397|ref|NP_459012.1| transaldolase B (STM0007) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-317) 317 PfamA32U 14-313 -94.100 58  PF00923.19; Q966C7_CAEEL/13-315; Transaldolase/Fructose-6-phosphate aldolase
8 gi|16763398|ref|NP_459013.1| molybdenum cofactor biosynthesis protein MogA (STM0008) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-196) 196 PfamA32U 8-152 -27.000 18  PF00994.24; CINAL_DESPS/4-169; Probable molybdopterin binding domain
9 gi|16763399|ref|NP_459014.1| hypothetical protein (STM0009) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-188) 188 PfamA32U 3-187 -86.500 31  PF01184.19; A7TND9_VANPO/71-277; GPR1/FUN34/yaaH family
10 gi|16763400|ref|NP_459015.1| hypothetical protein (STM0010) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-237) 237 PfamA32U 5-39 -10.700 31  PF13099.6; E3D0J1_9BACT/3-37; Domain of unknown function (DUF3944 topsan)
11 gi|16763401|ref|NP_459016.1|(removed signalp:1-23) hypothetical protein (STM0011) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 24-134) 111 PfamA32U 1-109 -58.000 79  PF10807.8; A6T4F3_KLEP7/3-132; Protein of unknown function (DUF2541 topsan)
12 gi|16763402|ref|NP_459017.1| molecular chaperone DnaK (STM0012) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-638) 638 PfamA32U 4-604 -162.000 62  PF00012.20; HSP7E_DROME/54-653; Hsp70 protein
13 gi|16763403|ref|NP_459018.1| chaperone protein DnaJ (STM0013) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-379) 379 PfamA32U 5-67 -39.100 55  PF00226.31; Q22028_CAEEL/17-79; DnaJ domain
28-204 -10.000 PF05458.12; SIVA_HUMAN/1-175; Cd27 binding protein (Siva)
120-333 -76.400 34  PF01556.18; T0NBZ6_9EURY/129-343; DnaJ C terminal domain
14 gi|16763404|ref|NP_459019.1| transcriptional regulator (STM0014) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-315) 315 PfamA32U 16-70 -13.100 20  PF00126.27; Q8EIK0_SHEON/8-63; Bacterial regulatory helix-turn-helix protein, lysR family
95-312 -9.640 10  PF03466.20; Q98I60_RHILO/88-294; LysR substrate binding domain
15 gi|16763405|ref|NP_459020.1| bacteriophage protein (STM0015) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-114) 114 PfamA32U 21-100 -15.800 PF16083.5; E8RPS2_ASTEC/15-92; LydA holin phage, holin superfamily III
16 gi|16763406|ref|NP_459021.1| hypothetical protein (STM0016) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-177) 177 PfamA32U 5-88 -51.000 38  PF05838.12; S5YCL9_PARAH/8-97; Glycosyl hydrolase 108
91-176 -36.200 23  PF09374.10; Q8EDS2_SHEON/119-186; Predicted Peptidoglycan domain
17 gi|16763407|ref|NP_459022.1| hypothetical protein (STM0017) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-147) 147 PfamA32U 25-102 -21.700 15  PF00486.28; Q9CGU0_LACLA/149-224; Transcriptional regulatory protein, C terminal
18 gi|16763408|ref|NP_459023.1| exochitinase (STM0018) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-699) 699 PfamA32U 55-465 -84.900 28  PF00704.28; Q9WFU7_9ABAC/160-544; Glycosyl hydrolases family 18
19 gi|16763409|ref|NP_459024.1| hydroxymethyltransferase (STM0019) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-998) 998 PfamA32U 1-429 -9.990 PF05895.12; Q56S85_9CAUD/1-634; Siphovirus protein of unknown function (DUF859 topsan)
20 gi|16763410|ref|NP_459025.1| cytoplasmic protein (STM0020) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-234) 234 PfamA32U 37-159 -16.200 PF04831.13; T1HCS8_RHOPR/40-266; Popeye protein conserved region
46-136 -17.200 11  PF00027.29; Q695H0_CHLRE/446-536; Cyclic nucleotide-binding domain
165-232 -28.800 36  PF15977.5; A6TEJ1_KLEP7/139-207; Winged helix-turn-helix DNA binding


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.