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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 4725< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 gi|16763411|ref|NP_459026.1|(removed signalp:1-24) fimbrial subunit (STM0021) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 25-180) 156 VFDB 2-155 -11.000 14  [S] COG5430 Uncharacterized secreted protein
9-129 -22.800 16  [NU] COG3539 P pilus assembly protein, pilin FimA
22 gi|16763412|ref|NP_459027.1|(removed signalp:1-26) fimbrial chaperone (STM0022) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 27-228) 202 VFDB 1-202 -84.000 29  [NU] COG3121 P pilus assembly protein, chaperone PapD
23 gi|16763413|ref|NP_459028.1|(removed signalp:1-35) fimbrial usher (STM0023) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 36-873) 838 VFDB 1-838 -184.000 52  [NU] COG3188 P pilus assembly protein, porin PapC
24 gi|16763414|ref|NP_459029.1|(removed signalp:1-21) fimbrial subunit (STM0024) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 22-335) 314 VFDB 1-282 -53.500 25  [NU] COG3539 P pilus assembly protein, pilin FimA
2-313 -19.100 11  [S] COG5430 Uncharacterized secreted protein
25 gi|16763415|ref|NP_459030.1|(removed signalp:1-23) fimbrial subunit (STM0025) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 24-181) 158 VFDB 1-157 -10.800 12  [S] COG5430 Uncharacterized secreted protein
6-128 -22.300 18  [NU] COG3539 P pilus assembly protein, pilin FimA
26 gi|16763416|ref|NP_459031.1|(removed signalp:1-20) fimbrial subunit (STM0026) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 21-172) 152 VFDB 4-122 -23.100 21  [NU] COG3539 P pilus assembly protein, pilin FimA
27 gi|16763417|ref|NP_459032.1| fimbrial chaperone (STM0027) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-243) 243 VFDB 7-237 -87.700 22  [NU] COG3121 P pilus assembly protein, chaperone PapD
28 gi|16763418|ref|NP_459033.1|(removed signalp:1-27) thiol-disulfide isomerase (STM0028) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 28-281) 254 VFDB 1-253 -26.800 17  [O] COG1651 Protein-disulfide isomerase
29 gi|39546288|ref|NP_945153.1| hypothetical protein (STM0028.1n) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-109) 109 VFDB 1-50 -7.830 12  [R] COG5645 Predicted periplasmic lipoprotein
30 gi|16763419|ref|NP_459034.1| transcriptional regulator (STM0029) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-149) 149 VFDB 2-135 -41.200 17  [K] COG3710 DNA-binding winged-HTH domains
31 gi|16763420|ref|NP_459035.1| transcriptional regulator (STM0030) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-334) 334 VFDB 7-313 -30.900 15  [K] COG0583 Transcriptional regulator
32 gi|16763421|ref|NP_459036.1| transcriptional regulator (STM0031) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-146) 146 VFDB 2-139 -42.400 20  [K] COG3710 DNA-binding winged-HTH domains
33 gi|16763422|ref|NP_459037.1| arylsulfatase (STM0032) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-572) 572 VFDB 64-502 -9.580 [S] COG1520 FOG: WD40-like repeat
110-422 -9.650 [S] COG3490 Uncharacterized protein conserved in bacteria
144-504 -10.600 [Q] KOG4649 PQQ (pyrrolo-quinoline quinone) repeat protein
34 gi|16763423|ref|NP_459038.1|(removed signalp:1-29) 5'-nucleotidase (STM0033) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 30-523) 494 VFDB 2-493 -91.600 19  [F] COG0737 5`-nucleotidase/2`,3`-cyclic phosphodiesterase and related esterases
35 gi|16763424|ref|NP_459039.1|(removed signalp:1-24) outer membrane/exported protein (STM0034) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 25-253) 229 VFDB 1-229 -55.600 [M] COG3248 Nucleoside-binding outer membrane protein
36 gi|16763425|ref|NP_459040.1|(removed signalp:1-25) arylsulfatase (STM0035) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 26-497) 472 VFDB 1-466 -109.000 28  [R] KOG3867 Sulfatase
37 gi|16763426|ref|NP_459041.1| arylsulfatase regulator (STM0036) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-396) 396 VFDB 7-395 -120.000 44  [R] COG0641 Arylsulfatase regulator (Fe-S oxidoreductase)
38 gi|16763427|ref|NP_459042.1| cytoplasmic protein (STM0037) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-417) 417 VFDB 1-104 -17.800 17  [K] KOG2907 RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12
1-414 -14.700 [L] COG3464 Transposase and inactivated derivatives
65-181 -26.200 15  [L] COG3677 Transposase and inactivated derivatives
39 gi|16763428|ref|NP_459043.1| arylsulfatase (STM0038) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-571) 571 VFDB 53-506 -10.500 [G] COG4993 Glucose dehydrogenase
156-511 -11.400 [Q] KOG4649 PQQ (pyrrolo-quinoline quinone) repeat protein
40 gi|16763429|ref|NP_459044.1| pH-dependent sodium/proton antiporter (STM0039) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-388) 388 VFDB 1-387 -121.000 92  [P] COG3004 Na+/H+ antiporter


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.