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# Query Length Result vs. Range Score %id Covered by template(s)
1 TM0001 TM0001 281882 Purified-2001-08-24 41 COG1018 5-33 -3.520 23  [Y] KOG2992 Nucleolar GTPase/ATPase p130
CSGID 13-37 -4.700 28  IDP06222 hypothetical protein HP1093 [Helicobacter pylori 26695] NP_207884 [Helicobacter pylori 26695]
H.sapiens 16-22 -5.470 85  sp|Q8NEQ6|CA064_HUMAN Uncharacterized protein C1orf64 OS=Homo sapiens GN=C1orf64 PE=2 SV=1
HGM_OVER 3-27 -1.010 20  HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;
NEW_HUMAN_DOMAINS 8-34 -4.010 25  sp|Q96M20|CT152_HUMAN Uncharacterized protein C20orf152 OS=Homo sapiens GN=C20orf152 PE=2 SV=2 (Range: 1-78)
PDB1018 10-39 -7.080 26  2jxc_B mol:protein length:45 Stonin-2
PfamA32U 15-22 -5.160 75  PF15547.6; F6RD88_HORSE/33-169; Steroid receptor-associated and regulated protein
SCOP207 9-39 -5.720 32  d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
VFDB 5-33 -3.520 23  [Y] KOG2992 Nucleolar GTPase/ATPase p130
2 TM0002 TM0002 281883 Purified-2001-08-29 41 COG1018 8-35 -4.680 28  [J] COG0256 Ribosomal protein L18
CSGID 8-35 -4.390 28  IDP04003 50S ribosomal protein L18 [Bacillus anthracis str. Sterne] BAS0126 [Bacillus anthracis str. Sterne]
H.sapiens 1-36 -5.590 11  sp|Q8WZ82|OVCA2_HUMAN Ovarian cancer-associated gene 2 protein OS=Homo sapiens GN=OVCA2 PE=1 SV=1
HGM_OVER 16-37 -2.140 18  HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574;
NEW_HUMAN_DOMAINS 6-36 -5.700 25  sp|Q12766|HMGX3_HUMAN HMG domain-containing protein 3 OS=Homo sapiens GN=HMGXB3 PE=2 SV=2 (Range: 1469-1518)
PDB1018 8-35 -5.270 17  5v7q_O mol:protein length:122 50S ribosomal protein L18
PfamA32U 4-33 -4.490 16  PF17196.4; Q82NZ0_STRAW/1-65; Protein of unknown function (DUF5133 topsan)
SCOP207 8-35 -6.420 32  d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]}
VFDB 8-35 -4.680 28  [J] COG0256 Ribosomal protein L18
3 TM0003 TM0003 281884 Purified-2001-12-06 40 COG1018 3-37 -4.330 14  [S] KOG3098 Uncharacterized conserved protein
CSGID 11-25 -3.320 33  IDP05447 conserved hypothetical protein [Bacillus phage lambda Ba01] BA_0441 [Bacillus anthracis str. Ames]
H.sapiens 2-14 -4.200 30  sp|P25054|APC_HUMAN Adenomatous polyposis coli protein OS=Homo sapiens GN=APC PE=1 SV=2 (Range: 1351-1650)
HGM_OVER 2-40 -2.730 12  PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]
NEW_HUMAN_DOMAINS 16-40 -5.280 16  sp|O14497|ARI1A_HUMAN AT-rich interactive domain-containing protein 1A OS=Homo sapiens GN=ARID1A PE=1 SV=3 (Range: 1814-1866)
PDB1018 1-40 -4.750 25  4qr0_A mol:protein length:97 CRISPR-associated endoribonuclease Cas2
PfamA32U 2-38 -4.940 24  PF05754.14; A0A0D9XQJ1_9ORYZ/48-101; Domain of unknown function (DUF834 topsan)
SCOP207 8-38 -5.250 34  d1m2oa2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 3-37 -4.330 14  [S] KOG3098 Uncharacterized conserved protein
4 TM0004 TM0004 281885 Purified-2004-07-19 31 COG1018 1-29 -3.590 34  [P] COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit
CSGID 6-30 -3.820 36  IDP90412 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_657 [Chlamydia trachomatis D/UW-3/CX]
H.sapiens 1-25 -4.100 24  sp|A6NIX2|WTIP_HUMAN Wilms tumor protein 1-interacting protein OS=Homo sapiens GN=WTIP PE=2 SV=2 (Range: 151-450)
HGM_OVER 9-20 -1.320 25  PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]
NEW_HUMAN_DOMAINS 2-29 -5.400 25  sp|Q56UN5|YSK4_HUMAN SPS1/STE20-related protein kinase YSK4 OS=Homo sapiens GN=YSK4 PE=1 SV=1 (Range: 622-678)
PDB1018 4-31 -4.610 10  2yue_A mol:protein length:168 Protein neuralized
PfamA32U 3-31 -4.550 34  PF07122.11; Q2GHT8_EHRCR/101-130; Variable length PCR target protein (VLPT)
SCOP207 3-24 -3.500 18  d5ig0a_ d.17.4.0 (A:) automated matches {Salpingoeca rosetta [TaxId: 946362]}
VFDB 1-29 -3.590 34  [P] COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit
5 TM0005 TM0005 281886 Purified-2001-01-30 650 COG1018 2-649 -124.000 24  [L] KOG1803 DNA helicase
CSGID 171-631 -31.200 16  IDP05118 putative helicase [Escherichia coli O157:H7 EDL933] Z5902 [Escherichia coli O157:H7 str. EDL933]
H.sapiens 2-278 -56.000 32  sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3 (Range: 1-300)
135-455 -81.100 35  sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3 (Range: 151-450)
339-638 -97.700 33  sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2 (Range: 601-900)
HGM_OVER 2-165 -19.700 15  HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;
NEW_HUMAN_DOMAINS 169-216 -5.970 sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)
PDB1018 1-649 -135.000 33  4b3f_X mol:protein length:646 DNA-BINDING PROTEIN SMUBP-2
PfamA32U 170-419 -71.000 30  PF13086.6; B6HQI4_PENRW/1305-1589; AAA domain
424-626 -70.800 33  PF13087.6; DNA2_RAT/805-1017; AAA domain
SCOP207 2-442 -49.000 16  d4pj3a3 c.37.1.19 (A:416-492,A:662-1133) Pre-mRNA splicing factor Cwf11 / Aquarius {Human (Homo sapiens) [TaxId: 9606]}
92-447 -65.800 23  d2gk6a1 c.37.1.19 (A:295-324,A:416-702) Upf1 {Human (Homo sapiens) [TaxId: 9606]}
448-649 -72.200 35  d2gk6a3 c.37.1.19 (A:703-911) Upf1 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 2-649 -124.000 24  [L] KOG1803 DNA helicase
6 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 COG1018 4-344 -70.100 20  [H] COG1441 O-succinylbenzoate synthase
CSGID 4-342 -79.500 27  IDP01895 gene: ycjG; putative chloromuconate cycloisomerase [Salmonella typhimurium LT2] STM1681 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 1-345 -59.500 16  sp|Q7L5Y1|ENOF1_HUMAN Mitochondrial enolase superfamily member 1 OS=Homo sapiens GN=ENOSF1 PE=1 SV=1
HGM_OVER 193-246 -3.090 PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
NEW_HUMAN_DOMAINS 133-218 -4.930 12  tr|E7EWK8|E7EWK8_HUMAN Uncharacterized protein OS=Homo sapiens GN=PLOD1 PE=4 SV=2 (Range: 19-216)
PDB1018 1-345 -105.000 100  2zad_A mol:protein length:345 Muconate cycloisomerase
PfamA32U 6-123 -41.300 22  PF02746.16; CLCB_PSEPU/5-125; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
112-329 -52.500 14  PF07476.11; A8AJ73_CITK8/162-410; Methylaspartate ammonia-lyase C-terminus
142-345 -54.500 18  PF13378.6; B5I604_9ACTN/167-381; Enolase C-terminal domain-like
SCOP207 3-124 -51.100 100  d2zada1 d.54.1.0 (A:2-124) automated matches {Thermotoga maritima [TaxId: 243274]}
95-345 -55.200 17  d4g8ta2 c.1.11.2 (A:134-442) automated matches {Actinobacillus succinogenes [TaxId: 339671]}
125-345 -75.800 100  d2zada2 c.1.11.0 (A:125-345) automated matches {Thermotoga maritima [TaxId: 243274]}
VFDB 4-344 -70.100 20  [H] COG1441 O-succinylbenzoate synthase
7 TM0007 TM0007 281888 Purified-2004-07-19 438 COG1018 13-366 -21.200 14  [O] KOG0909 Peptide:N-glycanase
57-372 -32.200 [R] COG1800 Predicted transglutaminase-like proteases
149-425 -45.000 15  [E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases
CSGID 242-418 -25.500 16  IDP02574 protease, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA1995 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 60-346 -9.540 11  sp|P49221|TGM4_HUMAN Protein-glutamine gamma-glutamyltransferase 4 OS=Homo sapiens GN=TGM4 PE=1 SV=2 (Range: 1-300)
141-367 -12.800 11  sp|Q8TAP6|CEP76_HUMAN Centrosomal protein of 76 kDa OS=Homo sapiens GN=CEP76 PE=1 SV=1 (Range: 151-450)
174-391 -26.700 14  sp|Q8NBH2|KY_HUMAN Kyphoscoliosis peptidase OS=Homo sapiens GN=KY PE=1 SV=1
241-438 -14.700 15  sp|Q08188|TGM3_HUMAN Protein-glutamine gamma-glutamyltransferase E OS=Homo sapiens GN=TGM3 PE=1 SV=4 (Range: 151-450)
HGM_OVER 168-360 -5.250 13  HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;
NEW_HUMAN_DOMAINS 270-394 -6.430 16  sp|Q86V25|VASH2_HUMAN Vasohibin-2 OS=Homo sapiens GN=VASH2 PE=2 SV=2 (Range: 99-270)
PDB1018 10-364 -19.900 3kd4_A mol:protein length:506 Putative protease
138-397 -47.000 17  3isr_A mol:protein length:293 Transglutaminase-like enzymes, putative cysteine protease
PfamA32U 220-364 -21.400 15  PF14381.6; K4BU86_SOLLC/288-498; Ethylene-responsive protein kinase Le-CTR1
259-363 -53.100 18  PF01841.19; Q0W040_METAR/73-192; Transglutaminase-like superfamily
SCOP207 104-366 -21.100 d1x3za_ d.3.1.4 (A:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
209-438 -13.900 14  d1rlla2 d.3.1.4 (A:141-461) Transglutaminase catalytic domain {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
VFDB 13-366 -21.200 14  [O] KOG0909 Peptide:N-glycanase
57-372 -32.200 [R] COG1800 Predicted transglutaminase-like proteases
149-425 -45.000 15  [E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases
8 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 COG1018 1-224 -80.900 31  [R] COG1878 Predicted metal-dependent hydrolase
CSGID 3-132 -5.770 IDP00201 hypothetical protein YPO1476 [Yersinia pestis CO92]
H.sapiens 51-224 -5.950 12  sp|Q8TE96|DQX1_HUMAN ATP-dependent RNA helicase DQX1 OS=Homo sapiens GN=DQX1 PE=2 SV=2 (Range: 451-717)
HGM_OVER 4-153 -3.500 10  PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)
NEW_HUMAN_DOMAINS 35-219 -5.770 11  sp|P35573|GDE_HUMAN Glycogen debranching enzyme OS=Homo sapiens GN=AGL PE=1 SV=3 (Range: 1-183)
PDB1018 1-222 -82.400 24  4cob_A mol:protein length:215 KYNURENINE FORMAMIDASE
PfamA32U 1-157 -59.800 20  PF04199.13; B9JI03_AGRRK/6-186; Putative cyclase
SCOP207 1-224 -80.700 27  d3krva_ c.8.8.1 (A:) Unnamed protein {Bacillus stearothermophilus [TaxId: 1422]}
VFDB 1-224 -80.900 31  [R] COG1878 Predicted metal-dependent hydrolase
9 TM0009 TM0009 281890 Purified-2001-02-14 142 COG1018 1-142 -50.700 20  [S] COG1633 Uncharacterized conserved protein
CSGID 11-142 -31.400 12  IDP04040 gene: cotJC; spore coat protein CotJC [Clostridium perfringens ATCC 13124] CPF_1068 [Clostridium perfringens ATCC 13124]
H.sapiens 4-142 -17.500 16  sp|Q99807|COQ7_HUMAN Ubiquinone biosynthesis protein COQ7 homolog OS=Homo sapiens GN=COQ7 PE=1 SV=3
HGM_OVER 13-140 -4.410 PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;
NEW_HUMAN_DOMAINS 26-58 -5.980 15  sp|Q9H4H8|FA83D_HUMAN Protein FAM83D OS=Homo sapiens GN=FAM83D PE=1 SV=3 (Range: 494-585)
PDB1018 1-142 -57.100 31  1vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526
PfamA32U 5-142 -44.100 15  PF09968.9; A6LNR3_THEM4/28-188; Uncharacterized protein domain (DUF2202 topsan)
SCOP207 2-142 -57.400 31  d1vjxa1 a.25.1.1 (A:1-145) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}
VFDB 1-142 -50.700 20  [S] COG1633 Uncharacterized conserved protein
10 TM0010 TM0010 281891 Purified-2005-03-03 607 COG1018 2-82 -15.700 23  [C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit
46-537 -103.000 33  [C] KOG2658 NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit
407-604 -27.000 25  [C] COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB
CSGID 132-537 -43.300 19  IDP00512 electron transport complex protein RnfC YPO2244 [Yersinia pestis CO92]
148-591 -25.500 24  IDP91352 electron transport complex protein RnfC [Vibrio vulnificus CMCP6] VV1_3095 [Vibrio vulnificus CMCP6]
H.sapiens 2-88 -13.300 25  sp|P19404|NDUV2_HUMAN(removed signalp:1-11) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
78-539 -98.000 33  sp|P49821|NDUV1_HUMAN NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Homo sapiens GN=NDUFV1 PE=1 SV=4
419-594 -12.700 22  sp|O00217|NDUS8_HUMAN(removed signalp:1-19) NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Homo sapiens GN=NDUFS8 PE=1 SV=1
HGM_OVER 430-559 -4.000 13  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
NEW_HUMAN_DOMAINS 456-588 -6.740 13  sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2 OS=Homo sapiens GN=MYCBP2 PE=1 SV=3 (Range: 4233-4375)
PDB1018 1-572 -108.000 30  5xf9_A mol:protein length:591 NAD-reducing hydrogenase
542-606 -18.300 26  1rgv_A mol:protein length:80 ferredoxin
PfamA32U 2-82 -15.900 21  PF01257.19; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin
158-328 -43.600 28  PF01512.17; A1U014_MARHV/14-154; Respiratory-chain NADH dehydrogenase 51 Kd subunit
393-596 -11.800 13  PF04015.12; B8E3B5_DICTD/41-314; Domain of unknown function (DUF362 topsan)
440-524 -41.400 36  PF10589.9; C6WX56_METML/343-427; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
542-593 -18.800 30  PF14697.6; D7CUR2_TRURR/338-410; 4Fe-4S dicluster domain
SCOP207 4-97 -19.600 34  d5abra_ c.47.1.0 (A:) automated matches {Azotobacter vinelandii [TaxId: 354]}
110-350 -71.600 49  d3iam11 c.142.1.1 (1:2-249) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
351-434 -34.700 36  d3iam12 d.15.13.0 (1:250-333) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
435-535 -41.300 42  d3iam13 a.29.12.0 (1:334-438) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
518-596 -21.500 32  d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
VFDB 2-82 -15.700 23  [C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit
46-537 -103.000 33  [C] KOG2658 NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit
407-604 -27.000 25  [C] COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB
11 TM0011 TM0011 281892 Purified-2004-02-02 128 COG1018 1-127 -44.700 23  [C] COG3411 Ferredoxin
CSGID 1-112 -8.870 18  IDP00459 gene: cysI; sulfite reductase [NADPH] hemoprotein beta-component YPO3371 [Yersinia pestis CO92]
H.sapiens 2-117 -28.700 17  sp|P19404|NDUV2_HUMAN(removed signalp:1-11) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
HGM_OVER 17-81 -4.210 23  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
NEW_HUMAN_DOMAINS 31-123 -7.060 11  sp|Q2QL34|MP17L_HUMAN Mpv17-like protein OS=Homo sapiens GN=MPV17L PE=1 SV=1 (Range: 1-104)
PDB1018 30-128 -45.800 28  1f37_A mol:protein length:110 FERREDOXIN [2FE-2S]
PfamA32U 2-111 -32.200 20  PF01257.19; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin
SCOP207 2-117 -30.300 17  d3iam2_ c.47.1.21 (2:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
33-125 -44.000 28  d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
VFDB 1-127 -44.700 23  [C] COG3411 Ferredoxin
12 TM0012 TM0012 281893 Purified-2001-08-29 176 COG1018 8-172 -79.200 27  [C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit
CSGID 49-170 -8.340 16  IDP02723 gene: nuoI; NADH dehydrogenase subunit I [Francisella tularensis subsp. tularensis SCHU S4] FTT0039 [Francisella tularensis subsp. tularensis SCHU S4]
H.sapiens 1-175 -78.100 30  sp|P19404|NDUV2_HUMAN(removed signalp:1-11) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
HGM_OVER 108-175 -4.220 11  HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;
NEW_HUMAN_DOMAINS 39-168 -6.100 12  sp|Q6P1X5|TAF2_HUMAN Transcription initiation factor TFIID subunit 2 OS=Homo sapiens GN=TAF2 PE=1 SV=3 (Range: 708-906)
PDB1018 16-175 -82.500 27  2fug_2 mol:protein length:181 NADH-quinone oxidoreductase chain 2
PfamA32U 26-173 -76.400 34  PF01257.19; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin
SCOP207 17-175 -83.200 27  d3iam2_ c.47.1.21 (2:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
VFDB 8-172 -79.200 27  [C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit
13 TM0013 TM0013 281894 Purified-2001-08-24 253 COG1018 1-250 -58.400 14  [C] COG0426 Uncharacterized flavoproteins
CSGID 1-252 -59.300 14  IDP02653 anaerobic nitric oxide reductase flavorubredoxin [Salmonella typhimurium LT2] STM2840 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 29-249 -37.900 20  sp|Q53H82|LACB2_HUMAN Beta-lactamase-like protein 2 OS=Homo sapiens GN=LACTB2 PE=1 SV=2
HGM_OVER 31-95 -4.860 PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
NEW_HUMAN_DOMAINS 33-99 -4.420 tr|C9J2F8|C9J2F8_HUMAN HCG22882, isoform CRA_a OS=Homo sapiens GN=PSMG4 PE=4 SV=1 (Range: 1-102)
PDB1018 1-240 -72.600 14  4fek_A mol:protein length:262 Putative diflavin flavoprotein A 5
PfamA32U 22-240 -31.900 11  PF14597.6; K9Q9I8_9NOSO/1-199; Metallo-beta-lactamase superfamily
SCOP207 1-243 -76.300 17  d2q9ua1 d.157.1.3 (A:4-253) Nitric oxide reductase N-terminal domain {Giardia intestinalis [TaxId: 5741]}
VFDB 1-250 -58.400 14  [C] COG0426 Uncharacterized flavoproteins
14 TM0014 TM0014 281895 Purified-2001-01-30 278 COG1018 4-275 -42.100 22  [NT] COG0840 Methyl-accepting chemotaxis protein
CSGID 2-277 -43.700 17  IDP91343 methyl-accepting chemotaxis protein [Vibrio vulnificus CMCP6] VV2_0072 [Vibrio vulnificus CMCP6]
7-245 -46.100 17  IDP01046 putative methyl-accepting chemotaxis protein STM3138 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 22-276 -25.200 sp|Q5KU26|COL12_HUMAN Collectin-12 OS=Homo sapiens GN=COLEC12 PE=1 SV=3 (Range: 151-450)
HGM_OVER 64-215 -4.910 PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;
NEW_HUMAN_DOMAINS 17-272 -7.750 10  tr|E7EQE5|E7EQE5_HUMAN Uncharacterized protein OS=Homo sapiens GN=DNAH3 PE=4 SV=1 (Range: 191-685)
PDB1018 8-277 -51.800 19  2ch7_A mol:protein length:309 METHYL-ACCEPTING CHEMOTAXIS PROTEIN
41-253 -69.200 100  3g67_A mol:protein length:213 Methyl-accepting chemotaxis protein
PfamA32U 22-275 -10.900 PF09599.10; Q7NUS9_CHRVO/2-343; Salmonella-Shigella invasin protein C (IpaC_SipC)
52-275 -47.700 11  PF03532.13; O50963_BORBU/3-255; OMS28 porin
SCOP207 36-186 -8.620 13  d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
VFDB 4-275 -42.100 22  [NT] COG0840 Methyl-accepting chemotaxis protein
15 TM0015 TM0015 281896 PDB-2007-09-14 192 COG1018 7-192 -51.900 21  [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit
CSGID 7-189 -77.400 43  IDP06186 gene: porG; pyruvate flavodoxin oxidoreductase subunit gamma [Helicobacter pylori J99] NP_223752 [Helicobacter pylori J99]
H.sapiens 1-184 -10.600 11  sp|Q9P0Z9|SOX_HUMAN Peroxisomal sarcosine oxidase OS=Homo sapiens GN=PIPOX PE=2 SV=2
HGM_OVER 3-186 -2.930 PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
NEW_HUMAN_DOMAINS 1-65 -4.760 15  sp|Q9HAT2|SIAE_HUMAN Sialate O-acetylesterase OS=Homo sapiens GN=SIAE PE=1 SV=1 (Range: 19-108)
PDB1018 1-192 -85.000 100  2raa_A mol:protein length:204 Pyruvate synthase subunit porC
PfamA32U 14-186 -60.300 21  PF01558.18; Q67PU1_SYMTH/11-175; Pyruvate ferredoxin/flavodoxin oxidoreductase
SCOP207 6-192 -61.900 18  d2c42a4 c.64.1.1 (A:416-668) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III {Desulfovibrio africanus [TaxId: 873]}
VFDB 7-192 -51.900 21  [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit
16 TM0016 TM0016 281897 Purified-2001-08-24 101 COG1018 19-95 -33.900 42  [C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit
CSGID 1-100 -34.200 23  IDP02723 gene: nuoI; NADH dehydrogenase subunit I [Francisella tularensis subsp. tularensis SCHU S4] FTT0039 [Francisella tularensis subsp. tularensis SCHU S4]
H.sapiens 1-100 -34.100 30  sp|O00217|NDUS8_HUMAN(removed signalp:1-19) NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Homo sapiens GN=NDUFS8 PE=1 SV=1
HGM_OVER 68-94 -6.970 22  PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;
NEW_HUMAN_DOMAINS 42-101 -8.880 17  sp|Q8NCS7|CTL5_HUMAN Choline transporter-like protein 5 OS=Homo sapiens GN=SLC44A5 PE=2 SV=2 (Range: 99-240)
PDB1018 1-100 -33.900 30  5xtb_B mol:protein length:176 NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial
PfamA32U 3-95 -30.100 28  PF04015.12; B8E3B5_DICTD/41-314; Domain of unknown function (DUF362 topsan)
SCOP207 25-100 -33.600 32  d3iam9_ d.58.1.5 (9:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
VFDB 19-95 -33.900 42  [C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit
17 TM0017 TM0017 281898 Purified-2003-03-05 394 COG1018 6-394 -99.000 31  [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
CSGID 7-377 -86.000 19  IDP06147 gene: oorA; 2-oxoglutarate-acceptor oxidoreductase subunit OorA [Helicobacter pylori J99] NP_223255 [Helicobacter pylori J99]
H.sapiens 15-379 -15.600 14  sp|P11177|ODPB_HUMAN Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3
63-344 -16.000 sp|Q96HY7|DHTK1_HUMAN Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Homo sapiens GN=DHTKD1 PE=2 SV=2 (Range: 601-900)
HGM_OVER 265-365 -2.820 17  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
NEW_HUMAN_DOMAINS 11-48 -6.480 27  sp|Q68CZ2|TENS3_HUMAN Tensin-3 OS=Homo sapiens GN=TNS3 PE=1 SV=2 (Range: 774-862)
PDB1018 6-393 -111.000 34  5c4i_A mol:protein length:395 Oxalate oxidoreductase subunit alpha
PfamA32U 20-201 -58.500 28  PF01855.19; KORA_ARCFU/14-229; Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
267-370 -36.000 23  PF17147.4; Q1IT45_KORVE/244-338; Pyruvate:ferredoxin oxidoreductase core domain II
SCOP207 7-256 -70.900 28  d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}
257-394 -37.600 29  d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase, PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
VFDB 6-394 -99.000 31  [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
18 TM0018 TM0018 281899 Purified-2001-08-24 324 COG1018 12-308 -74.100 19  [C] COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit
CSGID 1-307 -72.600 19  IDP06146 gene: oorB; 2-oxoglutarate-acceptor oxidoreductase subunit OorB [Helicobacter pylori J99] NP_223256 [Helicobacter pylori J99]
H.sapiens 35-225 -15.100 sp|A1L0T0|ILVBL_HUMAN(removed signalp:1-28) Acetolactate synthase-like protein OS=Homo sapiens GN=ILVBL PE=1 SV=2 (Range: 301-600)
50-324 -10.200 11  sp|P29803|ODPAT_HUMAN Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Homo sapiens GN=PDHA2 PE=1 SV=1
77-225 -15.800 sp|A1L0T0|ILVBL_HUMAN(removed signalp:1-28) Acetolactate synthase-like protein OS=Homo sapiens GN=ILVBL PE=1 SV=2 (Range: 451-604)
HGM_OVER 112-199 -2.810 13  PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
NEW_HUMAN_DOMAINS 14-41 -4.920 17  sp|Q92622|RUBIC_HUMAN Run domain Beclin-1 interacting and cystein-rich containing protein OS=Homo sapiens GN=KIAA0226 PE=1 SV=4 (Range: 675-736)
PDB1018 1-320 -87.100 39  5c4i_C mol:protein length:314 Oxalate oxidoreductase subunit beta
PfamA32U 2-226 -12.500 14  PF13292.6; DXS_HELMI/5-280; 1-deoxy-D-xylulose-5-phosphate synthase
54-224 -17.300 16  PF02775.21; Q6LZH8_METMP/393-541; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
76-324 -9.570 15  PF00676.20; ODBA_BACSU/20-321; Dehydrogenase E1 component
SCOP207 2-318 -67.600 26  d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
VFDB 12-308 -74.100 19  [C] COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit
19 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 COG1018 2-251 -91.100 33  [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
CSGID 1-251 -95.700 29  IDP02727 3-hydroxybutyrate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA4249 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 2-252 -88.700 27  sp|P0CG22|DR4L1_HUMAN Putative dehydrogenase/reductase SDR family member 4-like 2 OS=Homo sapiens GN=DHRS4L1 PE=5 SV=1
HGM_OVER 5-89 -4.280 20  PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;
NEW_HUMAN_DOMAINS 33-91 -5.450 15  tr|Q6ZNX1|Q6ZNX1_HUMAN CDNA FLJ26957 fis, clone SLV00486 OS=Homo sapiens PE=2 SV=1 (Range: 176-250)
PDB1018 2-250 -95.500 31  4gh5_A mol:protein length:269 Short-chain dehydrogenase/reductase SDR
PfamA32U 5-198 -76.200 33  PF00106.25; YOXD_BACSU/7-201; short chain dehydrogenase
10-249 -73.100 22  PF13561.6; I0I4U0_CALAS/13-250; Enoyl-(Acyl carrier protein) reductase
SCOP207 2-250 -96.200 31  d4gh5a_ c.2.1.0 (A:) automated matches {Xanthobacter autotrophicus [TaxId: 78245]}
VFDB 2-251 -91.100 33  [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
20 TM0020 TM0020 281901 Purified-2001-08-24 127 COG1018 4-127 -62.900 29  [D] COG0239 Integral membrane protein possibly involved in chromosome condensation
CSGID 2-127 -7.890 12  IDP05182 gene: gerHA; spore germination protein GerHA [Bacillus anthracis str. Ames] BA_4984 [Bacillus anthracis str. Ames]
H.sapiens 12-118 -9.790 30  sp|Q9Y6X4|F169A_HUMAN Protein FAM169A OS=Homo sapiens GN=FAM169A PE=1 SV=2 (Range: 151-450)
HGM_OVER 24-95 -6.500 PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;
NEW_HUMAN_DOMAINS 11-96 -7.160 sp|A6ZKI3|F127A_HUMAN Protein FAM127A OS=Homo sapiens GN=FAM127A PE=1 SV=1 (Range: 30-113)
PDB1018 2-127 -64.200 24  5kom_A mol:protein length:147 Putative fluoride ion transporter CrcB
PfamA32U 7-120 -57.600 33  PF02537.15; CRCB2_BACLD/5-113; CrcB-like protein, Camphor Resistance (CrcB)
SCOP207 3-106 -6.450 17  d5ee0a1 c.37.1.0 (A:16-303) automated matches {Oryza sativa [TaxId: 39947]}
VFDB 4-127 -62.900 29  [D] COG0239 Integral membrane protein possibly involved in chromosome condensation


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.