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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1872next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 TM0001 TM0001 281882 Purified-2001-08-24 41 CSGID 13-37 -4.700 28  IDP06222 hypothetical protein HP1093 [Helicobacter pylori 26695] NP_207884 [Helicobacter pylori 26695]
2 TM0002 TM0002 281883 Purified-2001-08-29 41 CSGID 8-35 -4.390 28  IDP04003 50S ribosomal protein L18 [Bacillus anthracis str. Sterne] BAS0126 [Bacillus anthracis str. Sterne]
3 TM0003 TM0003 281884 Purified-2001-12-06 40 CSGID 11-25 -3.320 33  IDP05447 conserved hypothetical protein [Bacillus phage lambda Ba01] BA_0441 [Bacillus anthracis str. Ames]
4 TM0004 TM0004 281885 Purified-2004-07-19 31 CSGID 6-30 -3.820 36  IDP90412 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_657 [Chlamydia trachomatis D/UW-3/CX]
5 TM0005 TM0005 281886 Purified-2001-01-30 650 CSGID 171-631 -31.200 16  IDP05118 putative helicase [Escherichia coli O157:H7 EDL933] Z5902 [Escherichia coli O157:H7 str. EDL933]
6 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 CSGID 4-342 -79.500 27  IDP01895 gene: ycjG; putative chloromuconate cycloisomerase [Salmonella typhimurium LT2] STM1681 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
7 TM0007 TM0007 281888 Purified-2004-07-19 438 CSGID 242-418 -25.500 16  IDP02574 protease, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA1995 [Bacillus anthracis str. `Ames Ancestor`]
8 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 CSGID 3-132 -5.770 IDP00201 hypothetical protein YPO1476 [Yersinia pestis CO92]
9 TM0009 TM0009 281890 Purified-2001-02-14 142 CSGID 11-142 -31.400 12  IDP04040 gene: cotJC; spore coat protein CotJC [Clostridium perfringens ATCC 13124] CPF_1068 [Clostridium perfringens ATCC 13124]
10 TM0010 TM0010 281891 Purified-2005-03-03 607 CSGID 132-537 -43.300 19  IDP00512 electron transport complex protein RnfC YPO2244 [Yersinia pestis CO92]
148-591 -25.500 24  IDP91352 electron transport complex protein RnfC [Vibrio vulnificus CMCP6] VV1_3095 [Vibrio vulnificus CMCP6]
11 TM0011 TM0011 281892 Purified-2004-02-02 128 CSGID 1-112 -8.870 18  IDP00459 gene: cysI; sulfite reductase [NADPH] hemoprotein beta-component YPO3371 [Yersinia pestis CO92]
12 TM0012 TM0012 281893 Purified-2001-08-29 176 CSGID 49-170 -8.340 16  IDP02723 gene: nuoI; NADH dehydrogenase subunit I [Francisella tularensis subsp. tularensis SCHU S4] FTT0039 [Francisella tularensis subsp. tularensis SCHU S4]
13 TM0013 TM0013 281894 Purified-2001-08-24 253 CSGID 1-252 -59.300 14  IDP02653 anaerobic nitric oxide reductase flavorubredoxin [Salmonella typhimurium LT2] STM2840 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
14 TM0014 TM0014 281895 Purified-2001-01-30 278 CSGID 2-277 -43.700 17  IDP91343 methyl-accepting chemotaxis protein [Vibrio vulnificus CMCP6] VV2_0072 [Vibrio vulnificus CMCP6]
7-245 -46.100 17  IDP01046 putative methyl-accepting chemotaxis protein STM3138 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
15 TM0015 TM0015 281896 PDB-2007-09-14 192 CSGID 7-189 -77.400 43  IDP06186 gene: porG; pyruvate flavodoxin oxidoreductase subunit gamma [Helicobacter pylori J99] NP_223752 [Helicobacter pylori J99]
16 TM0016 TM0016 281897 Purified-2001-08-24 101 CSGID 1-100 -34.200 23  IDP02723 gene: nuoI; NADH dehydrogenase subunit I [Francisella tularensis subsp. tularensis SCHU S4] FTT0039 [Francisella tularensis subsp. tularensis SCHU S4]
17 TM0017 TM0017 281898 Purified-2003-03-05 394 CSGID 7-377 -86.000 19  IDP06147 gene: oorA; 2-oxoglutarate-acceptor oxidoreductase subunit OorA [Helicobacter pylori J99] NP_223255 [Helicobacter pylori J99]
18 TM0018 TM0018 281899 Purified-2001-08-24 324 CSGID 1-307 -72.600 19  IDP06146 gene: oorB; 2-oxoglutarate-acceptor oxidoreductase subunit OorB [Helicobacter pylori J99] NP_223256 [Helicobacter pylori J99]
19 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 CSGID 1-251 -95.700 29  IDP02727 3-hydroxybutyrate dehydrogenase [Bacillus anthracis str. `Ames Ancestor`] GBAA4249 [Bacillus anthracis str. `Ames Ancestor`]
20 TM0020 TM0020 281901 Purified-2001-08-24 127 CSGID 2-127 -7.890 12  IDP05182 gene: gerHA; spore germination protein GerHA [Bacillus anthracis str. Ames] BA_4984 [Bacillus anthracis str. Ames]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.