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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1872next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 TM0001 TM0001 281882 Purified-2001-08-24 41 H.sapiens 16-22 -5.470 85  sp|Q8NEQ6|CA064_HUMAN Uncharacterized protein C1orf64 OS=Homo sapiens GN=C1orf64 PE=2 SV=1
2 TM0002 TM0002 281883 Purified-2001-08-29 41 H.sapiens 1-36 -5.590 11  sp|Q8WZ82|OVCA2_HUMAN Ovarian cancer-associated gene 2 protein OS=Homo sapiens GN=OVCA2 PE=1 SV=1
3 TM0003 TM0003 281884 Purified-2001-12-06 40 H.sapiens 2-14 -4.200 30  sp|P25054|APC_HUMAN Adenomatous polyposis coli protein OS=Homo sapiens GN=APC PE=1 SV=2 (Range: 1351-1650)
4 TM0004 TM0004 281885 Purified-2004-07-19 31 H.sapiens 1-25 -4.100 24  sp|A6NIX2|WTIP_HUMAN Wilms tumor protein 1-interacting protein OS=Homo sapiens GN=WTIP PE=2 SV=2 (Range: 151-450)
5 TM0005 TM0005 281886 Purified-2001-01-30 650 H.sapiens 2-278 -56.000 32  sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3 (Range: 1-300)
135-455 -81.100 35  sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3 (Range: 151-450)
339-638 -97.700 33  sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2 (Range: 601-900)
6 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 H.sapiens 1-345 -59.500 16  sp|Q7L5Y1|ENOF1_HUMAN Mitochondrial enolase superfamily member 1 OS=Homo sapiens GN=ENOSF1 PE=1 SV=1
7 TM0007 TM0007 281888 Purified-2004-07-19 438 H.sapiens 60-346 -9.540 11  sp|P49221|TGM4_HUMAN Protein-glutamine gamma-glutamyltransferase 4 OS=Homo sapiens GN=TGM4 PE=1 SV=2 (Range: 1-300)
141-367 -12.800 11  sp|Q8TAP6|CEP76_HUMAN Centrosomal protein of 76 kDa OS=Homo sapiens GN=CEP76 PE=1 SV=1 (Range: 151-450)
174-391 -26.700 14  sp|Q8NBH2|KY_HUMAN Kyphoscoliosis peptidase OS=Homo sapiens GN=KY PE=1 SV=1
241-438 -14.700 15  sp|Q08188|TGM3_HUMAN Protein-glutamine gamma-glutamyltransferase E OS=Homo sapiens GN=TGM3 PE=1 SV=4 (Range: 151-450)
8 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 H.sapiens 51-224 -5.950 12  sp|Q8TE96|DQX1_HUMAN ATP-dependent RNA helicase DQX1 OS=Homo sapiens GN=DQX1 PE=2 SV=2 (Range: 451-717)
9 TM0009 TM0009 281890 Purified-2001-02-14 142 H.sapiens 4-142 -17.500 16  sp|Q99807|COQ7_HUMAN Ubiquinone biosynthesis protein COQ7 homolog OS=Homo sapiens GN=COQ7 PE=1 SV=3
10 TM0010 TM0010 281891 Purified-2005-03-03 607 H.sapiens 2-88 -13.300 25  sp|P19404|NDUV2_HUMAN(removed signalp:1-11) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
78-539 -98.000 33  sp|P49821|NDUV1_HUMAN NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Homo sapiens GN=NDUFV1 PE=1 SV=4
419-594 -12.700 22  sp|O00217|NDUS8_HUMAN(removed signalp:1-19) NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Homo sapiens GN=NDUFS8 PE=1 SV=1
11 TM0011 TM0011 281892 Purified-2004-02-02 128 H.sapiens 2-117 -28.700 17  sp|P19404|NDUV2_HUMAN(removed signalp:1-11) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
12 TM0012 TM0012 281893 Purified-2001-08-29 176 H.sapiens 1-175 -78.100 30  sp|P19404|NDUV2_HUMAN(removed signalp:1-11) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Homo sapiens GN=NDUFV2 PE=1 SV=2
13 TM0013 TM0013 281894 Purified-2001-08-24 253 H.sapiens 29-249 -37.900 20  sp|Q53H82|LACB2_HUMAN Beta-lactamase-like protein 2 OS=Homo sapiens GN=LACTB2 PE=1 SV=2
14 TM0014 TM0014 281895 Purified-2001-01-30 278 H.sapiens 22-276 -25.200 sp|Q5KU26|COL12_HUMAN Collectin-12 OS=Homo sapiens GN=COLEC12 PE=1 SV=3 (Range: 151-450)
15 TM0015 TM0015 281896 PDB-2007-09-14 192 H.sapiens 1-184 -10.600 11  sp|Q9P0Z9|SOX_HUMAN Peroxisomal sarcosine oxidase OS=Homo sapiens GN=PIPOX PE=2 SV=2
16 TM0016 TM0016 281897 Purified-2001-08-24 101 H.sapiens 1-100 -34.100 30  sp|O00217|NDUS8_HUMAN(removed signalp:1-19) NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Homo sapiens GN=NDUFS8 PE=1 SV=1
17 TM0017 TM0017 281898 Purified-2003-03-05 394 H.sapiens 15-379 -15.600 14  sp|P11177|ODPB_HUMAN Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3
63-344 -16.000 sp|Q96HY7|DHTK1_HUMAN Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Homo sapiens GN=DHTKD1 PE=2 SV=2 (Range: 601-900)
18 TM0018 TM0018 281899 Purified-2001-08-24 324 H.sapiens 35-225 -15.100 sp|A1L0T0|ILVBL_HUMAN(removed signalp:1-28) Acetolactate synthase-like protein OS=Homo sapiens GN=ILVBL PE=1 SV=2 (Range: 301-600)
50-324 -10.200 11  sp|P29803|ODPAT_HUMAN Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Homo sapiens GN=PDHA2 PE=1 SV=1
77-225 -15.800 sp|A1L0T0|ILVBL_HUMAN(removed signalp:1-28) Acetolactate synthase-like protein OS=Homo sapiens GN=ILVBL PE=1 SV=2 (Range: 451-604)
19 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 H.sapiens 2-252 -88.700 27  sp|P0CG22|DR4L1_HUMAN Putative dehydrogenase/reductase SDR family member 4-like 2 OS=Homo sapiens GN=DHRS4L1 PE=5 SV=1
20 TM0020 TM0020 281901 Purified-2001-08-24 127 H.sapiens 12-118 -9.790 30  sp|Q9Y6X4|F169A_HUMAN Protein FAM169A OS=Homo sapiens GN=FAM169A PE=1 SV=2 (Range: 151-450)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205