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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1871next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 TM0001 TM0001 281882 Purified-2001-08-24 41 HGM_OVER 3-27 -1.010 20  HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;
2 TM0002 TM0002 281883 Purified-2001-08-29 41 HGM_OVER 16-37 -2.140 18  HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574;
3 TM0003 TM0003 281884 Purified-2001-12-06 40 HGM_OVER 2-40 -2.730 12  PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]
4 TM0004 TM0004 281885 Purified-2004-07-19 31 HGM_OVER 9-20 -1.320 25  PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]
5 TM0005 TM0005 281886 Purified-2001-01-30 650 HGM_OVER 2-165 -19.700 15  HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;
6 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 HGM_OVER 193-246 -3.090 PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
7 TM0007 TM0007 281888 Purified-2004-07-19 438 HGM_OVER 168-360 -5.250 13  HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;
8 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 HGM_OVER 4-153 -3.500 10  PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)
9 TM0009 TM0009 281890 Purified-2001-02-14 142 HGM_OVER 13-140 -4.410 PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;
10 TM0010 TM0010 281891 Purified-2005-03-03 607 HGM_OVER 430-559 -4.000 13  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
11 TM0011 TM0011 281892 Purified-2004-02-02 128 HGM_OVER 17-81 -4.210 23  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
12 TM0012 TM0012 281893 Purified-2001-08-29 176 HGM_OVER 108-175 -4.220 11  HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;
13 TM0013 TM0013 281894 Purified-2001-08-24 253 HGM_OVER 31-95 -4.860 PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
14 TM0014 TM0014 281895 Purified-2001-01-30 278 HGM_OVER 64-215 -4.910 PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;
15 TM0015 TM0015 281896 PDB-2007-09-14 192 HGM_OVER 3-186 -2.930 PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
16 TM0016 TM0016 281897 Purified-2001-08-24 101 HGM_OVER 68-94 -6.970 22  PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;
17 TM0017 TM0017 281898 Purified-2003-03-05 394 HGM_OVER 265-365 -2.820 17  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
18 TM0018 TM0018 281899 Purified-2001-08-24 324 HGM_OVER 112-199 -2.810 13  PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
19 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 HGM_OVER 5-89 -4.280 20  PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;
20 TM0020 TM0020 281901 Purified-2001-08-24 127 HGM_OVER 24-95 -6.500 PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.