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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1872next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 TM0001 TM0001 281882 Purified-2001-08-24 41 PfamA32U 15-22 -5.160 75  PF15547.6; F6RD88_HORSE/33-169; Steroid receptor-associated and regulated protein
2 TM0002 TM0002 281883 Purified-2001-08-29 41 PfamA32U 4-33 -4.490 16  PF17196.4; Q82NZ0_STRAW/1-65; Protein of unknown function (DUF5133 topsan)
3 TM0003 TM0003 281884 Purified-2001-12-06 40 PfamA32U 2-38 -4.940 24  PF05754.14; A0A0D9XQJ1_9ORYZ/48-101; Domain of unknown function (DUF834 topsan)
4 TM0004 TM0004 281885 Purified-2004-07-19 31 PfamA32U 3-31 -4.550 34  PF07122.11; Q2GHT8_EHRCR/101-130; Variable length PCR target protein (VLPT)
5 TM0005 TM0005 281886 Purified-2001-01-30 650 PfamA32U 170-419 -71.000 30  PF13086.6; B6HQI4_PENRW/1305-1589; AAA domain
424-626 -70.800 33  PF13087.6; DNA2_RAT/805-1017; AAA domain
6 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 PfamA32U 6-123 -41.300 22  PF02746.16; CLCB_PSEPU/5-125; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
112-329 -52.500 14  PF07476.11; A8AJ73_CITK8/162-410; Methylaspartate ammonia-lyase C-terminus
142-345 -54.500 18  PF13378.6; B5I604_9ACTN/167-381; Enolase C-terminal domain-like
7 TM0007 TM0007 281888 Purified-2004-07-19 438 PfamA32U 220-364 -21.400 15  PF14381.6; K4BU86_SOLLC/288-498; Ethylene-responsive protein kinase Le-CTR1
259-363 -53.100 18  PF01841.19; Q0W040_METAR/73-192; Transglutaminase-like superfamily
8 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 PfamA32U 1-157 -59.800 20  PF04199.13; B9JI03_AGRRK/6-186; Putative cyclase
9 TM0009 TM0009 281890 Purified-2001-02-14 142 PfamA32U 5-142 -44.100 15  PF09968.9; A6LNR3_THEM4/28-188; Uncharacterized protein domain (DUF2202 topsan)
10 TM0010 TM0010 281891 Purified-2005-03-03 607 PfamA32U 2-82 -15.900 21  PF01257.19; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin
158-328 -43.600 28  PF01512.17; A1U014_MARHV/14-154; Respiratory-chain NADH dehydrogenase 51 Kd subunit
393-596 -11.800 13  PF04015.12; B8E3B5_DICTD/41-314; Domain of unknown function (DUF362 topsan)
440-524 -41.400 36  PF10589.9; C6WX56_METML/343-427; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
542-593 -18.800 30  PF14697.6; D7CUR2_TRURR/338-410; 4Fe-4S dicluster domain
11 TM0011 TM0011 281892 Purified-2004-02-02 128 PfamA32U 2-111 -32.200 20  PF01257.19; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin
12 TM0012 TM0012 281893 Purified-2001-08-29 176 PfamA32U 26-173 -76.400 34  PF01257.19; Q1HPR5_BOMMO/56-203; Thioredoxin-like [2Fe-2S] ferredoxin
13 TM0013 TM0013 281894 Purified-2001-08-24 253 PfamA32U 22-240 -31.900 11  PF14597.6; K9Q9I8_9NOSO/1-199; Metallo-beta-lactamase superfamily
14 TM0014 TM0014 281895 Purified-2001-01-30 278 PfamA32U 22-275 -10.900 PF09599.10; Q7NUS9_CHRVO/2-343; Salmonella-Shigella invasin protein C (IpaC_SipC)
52-275 -47.700 11  PF03532.13; O50963_BORBU/3-255; OMS28 porin
15 TM0015 TM0015 281896 PDB-2007-09-14 192 PfamA32U 14-186 -60.300 21  PF01558.18; Q67PU1_SYMTH/11-175; Pyruvate ferredoxin/flavodoxin oxidoreductase
16 TM0016 TM0016 281897 Purified-2001-08-24 101 PfamA32U 3-95 -30.100 28  PF04015.12; B8E3B5_DICTD/41-314; Domain of unknown function (DUF362 topsan)
17 TM0017 TM0017 281898 Purified-2003-03-05 394 PfamA32U 20-201 -58.500 28  PF01855.19; KORA_ARCFU/14-229; Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
267-370 -36.000 23  PF17147.4; Q1IT45_KORVE/244-338; Pyruvate:ferredoxin oxidoreductase core domain II
18 TM0018 TM0018 281899 Purified-2001-08-24 324 PfamA32U 2-226 -12.500 14  PF13292.6; DXS_HELMI/5-280; 1-deoxy-D-xylulose-5-phosphate synthase
54-224 -17.300 16  PF02775.21; Q6LZH8_METMP/393-541; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
76-324 -9.570 15  PF00676.20; ODBA_BACSU/20-321; Dehydrogenase E1 component
19 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 PfamA32U 5-198 -76.200 33  PF00106.25; YOXD_BACSU/7-201; short chain dehydrogenase
10-249 -73.100 22  PF13561.6; I0I4U0_CALAS/13-250; Enoyl-(Acyl carrier protein) reductase
20 TM0020 TM0020 281901 Purified-2001-08-24 127 PfamA32U 7-120 -57.600 33  PF02537.15; CRCB2_BACLD/5-113; CrcB-like protein, Camphor Resistance (CrcB)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.