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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1872next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 TM0001 TM0001 281882 Purified-2001-08-24 41 VFDB 5-33 -3.520 23  [Y] KOG2992 Nucleolar GTPase/ATPase p130
2 TM0002 TM0002 281883 Purified-2001-08-29 41 VFDB 8-35 -4.680 28  [J] COG0256 Ribosomal protein L18
3 TM0003 TM0003 281884 Purified-2001-12-06 40 VFDB 3-37 -4.330 14  [S] KOG3098 Uncharacterized conserved protein
4 TM0004 TM0004 281885 Purified-2004-07-19 31 VFDB 1-29 -3.590 34  [P] COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit
5 TM0005 TM0005 281886 Purified-2001-01-30 650 VFDB 2-649 -124.000 24  [L] KOG1803 DNA helicase
6 TM0006 TM0006 281887 Diffraction|HSQC-2004-07-13 345 VFDB 4-344 -70.100 20  [H] COG1441 O-succinylbenzoate synthase
7 TM0007 TM0007 281888 Purified-2004-07-19 438 VFDB 13-366 -21.200 14  [O] KOG0909 Peptide:N-glycanase
57-372 -32.200 [R] COG1800 Predicted transglutaminase-like proteases
149-425 -45.000 15  [E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases
8 TM0008 TM0008 281889 Crystal|NMR-2001-04-01 224 VFDB 1-224 -80.900 31  [R] COG1878 Predicted metal-dependent hydrolase
9 TM0009 TM0009 281890 Purified-2001-02-14 142 VFDB 1-142 -50.700 20  [S] COG1633 Uncharacterized conserved protein
10 TM0010 TM0010 281891 Purified-2005-03-03 607 VFDB 2-82 -15.700 23  [C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit
46-537 -103.000 33  [C] KOG2658 NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit
407-604 -27.000 25  [C] COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB
11 TM0011 TM0011 281892 Purified-2004-02-02 128 VFDB 1-127 -44.700 23  [C] COG3411 Ferredoxin
12 TM0012 TM0012 281893 Purified-2001-08-29 176 VFDB 8-172 -79.200 27  [C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit
13 TM0013 TM0013 281894 Purified-2001-08-24 253 VFDB 1-250 -58.400 14  [C] COG0426 Uncharacterized flavoproteins
14 TM0014 TM0014 281895 Purified-2001-01-30 278 VFDB 4-275 -42.100 22  [NT] COG0840 Methyl-accepting chemotaxis protein
15 TM0015 TM0015 281896 PDB-2007-09-14 192 VFDB 7-192 -51.900 21  [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit
16 TM0016 TM0016 281897 Purified-2001-08-24 101 VFDB 19-95 -33.900 42  [C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit
17 TM0017 TM0017 281898 Purified-2003-03-05 394 VFDB 6-394 -99.000 31  [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
18 TM0018 TM0018 281899 Purified-2001-08-24 324 VFDB 12-308 -74.100 19  [C] COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit
19 TM0019 TM0019 281900 Crystal|NMR-2004-03-31 256 VFDB 2-251 -91.100 33  [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
20 TM0020 TM0020 281901 Purified-2001-08-24 127 VFDB 4-127 -62.900 29  [D] COG0239 Integral membrane protein possibly involved in chromosome condensation


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Jaroszewski L, Li W, Godzik A. Comparison of sequence profiles. Strategies for structural predictions using sequence information. Protein Sci. 2000 Feb;9(2):232-41.