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Results: 1-20 of 8581next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 [H] COG0001 Glutamate-1-semialdehyde aminotransferase 411 COG1018 18-411 -53.100 25  [E] KOG1402 Ornithine aminotransferase
CSGID 1-411 -105.000 58  IDP02781 gene: hemL-2; glutamate-1-semialdehyde aminotransferase [Bacillus anthracis str. `Ames Ancestor`] GBAA4693 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 19-411 -52.500 23  sp|Q9BYV1|AGT2_HUMAN(removed signalp:1-24) Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1
HGM_OVER 170-328 -4.340 10  PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;
NEW_HUMAN_DOMAINS 165-238 -4.690 25  sp|Q86UD0|CI140_HUMAN Protein C9orf140 OS=Homo sapiens GN=C9orf140 PE=2 SV=2 (Range: 24-106)
PDB1018 1-411 -107.000 84  2cfb_A mol:protein length:411 GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE
PfamA32U 18-408 -54.300 26  PF00202.21; Y2045_BACPE/19-432; Aminotransferase class-III
SCOP207 1-411 -105.000 74  d5hdma_ c.67.1.4 (A:) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
VFDB 18-411 -53.100 25  [E] KOG1402 Ornithine aminotransferase
2 [E] COG0002 Acetylglutamate semialdehyde dehydrogenase 336 COG1018 1-331 -92.000 29  [E] KOG4354 N-acetyl-gamma-glutamyl-phosphate reductase
CSGID 1-335 -108.000 40  IDP00139 gene: argC; N-acetyl-gamma-glutamyl-phosphate reductase BA_4355 [Bacillus anthracis str. Ames]
H.sapiens 1-324 -17.700 12  sp|P04406|G3P_HUMAN Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3
HGM_OVER 139-318 -4.330 14  PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;
NEW_HUMAN_DOMAINS 14-195 -5.240 10  sp|Q8N9S7|CX059_HUMAN Uncharacterized protein CXorf59 OS=Homo sapiens GN=CXorf59 PE=2 SV=1 (Range: 95-322)
PDB1018 1-336 -104.000 39  1xyg_A mol:protein length:359 putative N-acetyl-gamma-glutamyl-phosphate reductase
PfamA32U 3-120 -41.600 20  PF01118.24; DHAS_YEAST/6-132; Semialdehyde dehydrogenase, NAD binding domain
153-306 -30.500 15  PF02774.18; DHAS_ECOLI/144-353; Semialdehyde dehydrogenase, dimerisation domain
SCOP207 1-180 -57.200 36  d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}
144-304 -65.800 35  d2cvoa2 d.81.1.1 (A:219-383) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
VFDB 1-331 -92.000 29  [E] KOG4354 N-acetyl-gamma-glutamyl-phosphate reductase
3 [P] COG0003 Oxyanion-translocating ATPase 396 COG1018 1-317 -66.700 22  [P] KOG2825 Putative arsenite-translocating ATPase
2-379 -10.400 12  [L] COG1110 Reverse gyrase
CSGID 1-238 -20.300 14  IDP01443 ParA family protein VC2061 [Vibrio cholerae O1 biovar El Tor str. N16961]
3-307 -18.200 18  IDP01890 ATPase, ParA family [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0063c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
3-351 -17.900 18  IDP04010 gene: minD; septum site-determining protein MinD [Clostridium perfringens ATCC 13124] CPF_2393 [Clostridium perfringens ATCC 13124]
326-396 -10.400 25  IDP01107 heat shock protein, Hsp20 family BA_2250 [Bacillus anthracis str. Ames]
H.sapiens 1-314 -67.000 22  sp|O43681|ASNA_HUMAN ATPase ASNA1 OS=Homo sapiens GN=ASNA1 PE=1 SV=2
HGM_OVER 2-129 -3.940 13  PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152
NEW_HUMAN_DOMAINS 2-28 -6.370 7  sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)
PDB1018 2-392 -79.900 24  3igf_A mol:protein length:374 All4481 protein
PfamA32U 1-307 -71.700 22  PF02374.15; ASNA_HUMAN/37-340; Anion-transporting ATPase
328-390 -22.100 36  PF17886.1; A9WBH2_CHLAA/329-391; HSP20-like domain found in ArsA
SCOP207 2-305 -65.200 26  d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
326-396 -10.000 28  d4elda_ b.15.1.1 (A:) Small heat shock protein {Methanococcus jannaschii [TaxId: 2190]}
VFDB 1-317 -66.700 22  [P] KOG2825 Putative arsenite-translocating ATPase
2-379 -10.400 12  [L] COG1110 Reverse gyrase
4 [P] COG0004 Ammonia permease 470 COG1018 24-468 -112.000 34  [P] KOG0682 Ammonia permease
CSGID 27-449 -5.940 14  IDP92565 nonstructural protein 1, partial [Dengue virus 2] AAA66406 [Dengue virus 2]
H.sapiens 43-459 -84.700 17  sp|Q9H310|RHBG_HUMAN(removed signalp:1-27) Ammonium transporter Rh type B OS=Homo sapiens GN=RHBG PE=1 SV=2
HGM_OVER 162-447 -3.420 9  PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF
NEW_HUMAN_DOMAINS 219-259 -4.880 22  sp|Q96AQ9|F131C_HUMAN Protein FAM131C OS=Homo sapiens GN=FAM131C PE=2 SV=2 (Range: 1-119)
PDB1018 13-467 -116.000 32  5aid_A mol:protein length:448 MEP2
PfamA32U 41-460 -111.000 35  PF00909.21; MEP2_YEAST/33-444; Ammonium Transporter Family
SCOP207 35-461 -113.000 43  d2b2ha_ f.44.1.0 (A:) automated matches {Archaeoglobus fulgidus [TaxId: 2234]}
VFDB 24-468 -112.000 34  [P] KOG0682 Ammonia permease
5 [F] COG0005 Purine nucleoside phosphorylase 271 COG1018 2-271 -101.000 45  [F] KOG3984 Purine nucleoside phosphorylase
CSGID 20-268 -19.900 14  IDP04345 uridine phosphorylase [Vibrio cholerae O1 biovar eltor str. N16961] VC1034 [Vibrio cholerae O1 biovar El Tor str. N16961]
H.sapiens 1-271 -101.000 45  sp|P00491|PNPH_HUMAN Purine nucleoside phosphorylase OS=Homo sapiens GN=PNP PE=1 SV=2
HGM_OVER 1-115 -3.770 14  HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;
NEW_HUMAN_DOMAINS 168-271 -5.450 15  sp|Q8IYM0|F186B_HUMAN Protein FAM186B OS=Homo sapiens GN=FAM186B PE=2 SV=2 (Range: 199-316)
PDB1018 1-271 -107.000 50  4m1e_A mol:protein length:297 Purine nucleoside phosphorylase
PfamA32U 22-268 -80.400 19  PF01048.20; Q4DQ97_TRYCC/13-261; Phosphorylase superfamily
SCOP207 7-271 -106.000 41  d4uc0a_ c.56.2.0 (A:) automated matches {Agrobacterium vitis [TaxId: 373]}
VFDB 2-271 -101.000 45  [F] KOG3984 Purine nucleoside phosphorylase
6 [E] COG0006 Xaa-Pro aminopeptidase 356 COG1018 2-356 -60.400 22  [E] KOG2414 Putative Xaa-Pro aminopeptidase
CSGID 4-356 -107.000 32  IDP00677 proline dipeptidase SACOL1588 [Staphylococcus aureus subsp. aureus COL]
H.sapiens 1-354 -61.000 24  sp|P12955|PEPD_HUMAN Xaa-Pro dipeptidase OS=Homo sapiens GN=PEPD PE=1 SV=3
105-356 -65.000 18  sp|Q9Y5B9|SP16H_HUMAN FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1 (Range: 151-450)
HGM_OVER 154-352 -4.200 14  HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;
NEW_HUMAN_DOMAINS 158-320 -7.810 18  sp|Q9UKN5|PRDM4_HUMAN PR domain zinc finger protein 4 OS=Homo sapiens GN=PRDM4 PE=1 SV=3 (Range: 1-167)
PDB1018 2-356 -106.000 31  3q6d_A mol:protein length:356 Proline dipeptidase
PfamA32U 5-127 -22.200 12  PF01321.18; Y4TL_SINFN/18-162; Creatinase/Prolidase N-terminal domain
134-338 -84.700 38  PF00557.24; YOD1_SCHPO/228-435; Metallopeptidase family M24
SCOP207 2-125 -23.700 16  d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]}
128-349 -94.100 36  d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Pyrococcus furiosus [TaxId: 2261]}
VFDB 2-356 -60.400 22  [E] KOG2414 Putative Xaa-Pro aminopeptidase
7 [H] COG0007 Uroporphyrinogen-III methylase 292 COG1018 30-276 -82.100 31  [H] COG2875 Precorrin-4 methylase
CSGID 22-285 -100.000 38  IDP93866 uroporphyrinogen-III methyltransferase [Yersinia enterocolitica subsp. palearctica Y11] YP_006005134 [Yersinia enterocolitica subsp. palearctica Y11]
H.sapiens 27-269 -50.900 14  sp|Q9H2P9|DPH5_HUMAN Diphthine synthase OS=Homo sapiens GN=DPH5 PE=1 SV=2
HGM_OVER 65-257 -4.050 9  HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;
NEW_HUMAN_DOMAINS 26-123 -6.180 13  sp|Q5VW00|DC122_HUMAN DDB1- and CUL4-associated factor 12-like protein 2 OS=Homo sapiens GN=DCAF12L2 PE=2 SV=1 (Range: 359-463)
PDB1018 11-290 -104.000 71  1s4d_A mol:protein length:280 Uroporphyrin-III C-methyltransferase
PfamA32U 26-238 -65.300 23  PF00590.20; Q3A6A0_PELCD/39-272; Tetrapyrrole (Corrin/Porphyrin) Methylases
SCOP207 25-269 -95.800 44  d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and 5 {Salmonella typhimurium [TaxId: 90371]}
VFDB 30-276 -82.100 31  [H] COG2875 Precorrin-4 methylase
8 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 554 COG1018 2-554 -145.000 40  [J] KOG1148 Glutaminyl-tRNA synthetase
CSGID 2-554 -156.000 86  IDP05277 gene: glnS; glutaminyl-tRNA synthetase [Yersinia pestis CO92] YPO2630 [Yersinia pestis CO92]
H.sapiens 1-510 -89.700 13  sp|Q5JPH6|SYEM_HUMAN Probable glutamyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=EARS2 PE=1 SV=2
2-286 -103.000 40  sp|P07814|SYEP_HUMAN Bifunctional aminoacyl-tRNA synthetase OS=Homo sapiens GN=EPRS PE=1 SV=5 (Range: 151-450)
65-374 -101.000 48  sp|P47897|SYQ_HUMAN Glutaminyl-tRNA synthetase OS=Homo sapiens GN=QARS PE=1 SV=1 (Range: 301-600)
287-554 -59.400 23  sp|P07814|SYEP_HUMAN Bifunctional aminoacyl-tRNA synthetase OS=Homo sapiens GN=EPRS PE=1 SV=5 (Range: 451-750)
HGM_OVER 29-330 -3.130 10  PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)
NEW_HUMAN_DOMAINS 21-92 -6.320 10  sp|Q5D0E6|DALD3_HUMAN DALR anticodon-binding domain-containing protein 3 OS=Homo sapiens GN=DALRD3 PE=2 SV=2 (Range: 1-178)
PDB1018 1-554 -168.000 100  1o0b_A mol:protein length:554 Glutaminyl-tRNA synthetase
PfamA32U 27-338 -123.000 100  PF00749.21; SYQ_ECOLI/27-338; tRNA synthetases class I (E and Q), catalytic domain
340-528 -45.700 49  PF03950.18; Q6AJL3_DESPS/350-543; tRNA synthetases class I (E and Q), anti-codon binding domain
SCOP207 8-339 -123.000 65  d5bnza1 c.26.1.0 (A:8-340) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
340-551 -50.600 51  d5bnza2 b.53.1.0 (A:341-555) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
VFDB 2-554 -145.000 40  [J] KOG1148 Glutaminyl-tRNA synthetase
9 [J] COG0009 Putative translation factor (SUA5) 346 COG1018 1-344 -99.100 43  [J] KOG3051 RNA binding/translational regulation protein of the SUA5 family
CSGID 1-346 -110.000 61  IDP01864 sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA5568 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 1-242 -74.900 26  sp|Q86U90|YRDC_HUMAN YrdC domain-containing protein, mitochondrial OS=Homo sapiens GN=YRDC PE=1 SV=1
HGM_OVER 2-183 -3.300 14  PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;
NEW_HUMAN_DOMAINS 33-161 -5.670 20  sp|Q7RTU3|OLIG3_HUMAN Oligodendrocyte transcription factor 3 OS=Homo sapiens GN=OLIG3 PE=1 SV=2 (Range: 147-272)
PDB1018 5-346 -105.000 44  2eqa_A mol:protein length:352 Hypothetical protein ST1526
PfamA32U 26-203 -82.000 36  PF01300.18; Q6AL59_DESPS/27-203; Telomere recombination
205-341 -40.100 40  PF03481.13; R5ALB5_9CLOT/198-340; Putative GTP-binding controlling metal-binding
SCOP207 6-218 -77.300 26  d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
VFDB 1-344 -99.100 43  [J] KOG3051 RNA binding/translational regulation protein of the SUA5 family
10 [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 306 COG1018 1-305 -91.100 35  [E] KOG2964 Arginase family protein
CSGID 91-306 -7.350 14  IDP01387 protease DO VC0566 [Vibrio cholerae O1 biovar El Tor str. N16961]
H.sapiens 4-305 -96.500 37  sp|Q9BSE5|SPEB_HUMAN Agmatinase, mitochondrial OS=Homo sapiens GN=AGMAT PE=1 SV=2
HGM_OVER 90-157 -3.100 16  PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;
NEW_HUMAN_DOMAINS 36-294 -5.780 11  sp|Q96AB6|NTAN1_HUMAN Protein N-terminal asparagine amidohydrolase OS=Homo sapiens GN=NTAN1 PE=1 SV=3 (Range: 1-310)
PDB1018 4-305 -101.000 36  1gq6_A mol:protein length:313 PROCLAVAMINATE AMIDINO HYDROLASE
PfamA32U 34-299 -93.800 39  PF00491.21; Q164F5_ROSDO/34-308; Arginase family
SCOP207 11-305 -101.000 37  d1gq6a_ c.42.1.1 (A:) Proclavaminate amidino hydrolase {Streptomyces clavuligerus [TaxId: 1901]}
VFDB 1-305 -91.100 35  [E] KOG2964 Arginase family protein
11 [S] COG0011 Uncharacterized conserved protein 94 COG1018 1-89 -5.600 15  [J] KOG2916 Translation initiation factor 2, alpha subunit (eIF-2alpha)
CSGID 8-56 -5.270 10  IDP05084 putative ATP-dependent DNA helicase (together with adjacent 3 orfs) [Escherichia coli O157:H7 EDL933] Z4803 [Escherichia coli O157:H7 str. EDL933]
H.sapiens 4-82 -6.350 8  sp|Q01459|DIAC_HUMAN(removed signalp:1-38) Di-N-acetylchitobiase OS=Homo sapiens GN=CTBS PE=1 SV=1
HGM_OVER 20-81 -4.110 20  PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
NEW_HUMAN_DOMAINS 1-59 -5.190 13  sp|Q8TC92|ENOX1_HUMAN Ecto-NOX disulfide-thiol exchanger 1 OS=Homo sapiens GN=ENOX1 PE=1 SV=1 (Range: 570-643)
PDB1018 1-94 -49.400 100  1vk8_A mol:protein length:106 hypothetical protein TM0486
PfamA32U 6-94 -36.200 23  PF01910.17; A5D404_PELTS/4-96; Thiamine-binding protein
SCOP207 2-94 -48.300 100  d1vk8a_ d.58.48.1 (A:) Hypothetical protein TM0486 {Thermotoga maritima [TaxId: 2336]}
VFDB 1-89 -5.600 15  [J] KOG2916 Translation initiation factor 2, alpha subunit (eIF-2alpha)
12 [J] COG0012 Predicted GTPase, probable translation factor 397 COG1018 1-397 -95.300 22  [R] KOG1491 Predicted GTP-binding protein (ODN superfamily)
CSGID 1-396 -99.800 26  IDP02675 GTP-binding protein YchF [Coxiella burnetii RSA 493] CBU_1842 [Coxiella burnetii RSA 493]
H.sapiens 1-395 -95.200 24  sp|Q9NTK5|OLA1_HUMAN Obg-like ATPase 1 OS=Homo sapiens GN=OLA1 PE=1 SV=2
HGM_OVER 13-390 -2.830 10  PB034180 _Gut.Meta.Jp.0112129_ gi|163310377|dbj|BABD01000320.1||2 (+ 509:1679~0 complete)
NEW_HUMAN_DOMAINS 6-106 -5.810 13  sp|Q9BX69|CARD6_HUMAN Caspase recruitment domain-containing protein 6 OS=Homo sapiens GN=CARD6 PE=1 SV=2 (Range: 448-668)
PDB1018 1-397 -124.000 88  1wxq_A mol:protein length:397 GTP-binding protein
PfamA32U 1-263 -19.800 25  PF02421.18; B3EBA7_GEOLS/7-162; Ferrous iron transport protein B
220-327 -24.500 37  PF08438.10; U1I0Z5_ENDPU/226-345; GTPase of unknown function C-terminal
319-395 -32.800 26  PF06071.13; E6TZX7_BACCJ/282-365; Protein of unknown function (DUF933 topsan)
SCOP207 1-319 -93.800 87  d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}
320-395 -32.200 90  d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}
VFDB 1-397 -95.300 22  [R] KOG1491 Predicted GTP-binding protein (ODN superfamily)
13 [J] COG0013 Alanyl-tRNA synthetase 872 COG1018 1-872 -196.000 33  [J] KOG0188 Alanyl-tRNA synthetase
CSGID 1-872 -215.000 52  IDP05327 gene: alaS; alanyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1504 [Listeria monocytogenes EGD-e]
H.sapiens 2-293 -99.200 40  sp|P49588|SYAC_HUMAN Alanyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 (Range: 1-300)
135-432 -92.500 38  sp|P49588|SYAC_HUMAN Alanyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 (Range: 151-450)
406-695 -76.600 30  sp|P49588|SYAC_HUMAN Alanyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 (Range: 451-750)
536-821 -72.900 24  sp|Q5JTZ9|SYAM_HUMAN Alanyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=AARS2 PE=1 SV=1 (Range: 601-900)
562-860 -65.500 26  sp|P49588|SYAC_HUMAN Alanyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 (Range: 601-900)
HGM_OVER 322-434 -4.140 10  PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]
NEW_HUMAN_DOMAINS 89-170 -5.970 16  sp|O60241|BAI2_HUMAN Brain-specific angiogenesis inhibitor 2 OS=Homo sapiens GN=BAI2 PE=2 SV=2 (Range: 33-128)
PDB1018 2-703 -158.000 27  2zze_A mol:protein length:752 Alanyl-tRNA synthetase
2-872 -149.000 25  3wqy_A mol:protein length:906 Alanine--tRNA ligase
PfamA32U 8-558 -143.000 42  PF01411.19; SYA_HAEIN/6-555; tRNA synthetases class II (A)
SCOP207 3-248 -101.000 48  d1yfsa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
249-462 -64.400 39  d1yfsa1 a.203.1.1 (A:237-453) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
487-554 -18.200 35  d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
555-701 -55.200 29  d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
VFDB 1-872 -196.000 33  [J] KOG0188 Alanyl-tRNA synthetase
14 [E] COG0014 Gamma-glutamyl phosphate reductase 417 COG1018 4-417 -100.000 36  [E] KOG4165 Gamma-glutamyl phosphate reductase
CSGID 2-414 -70.100 16  IDP02108 gene: aldB; aldehyde dehydrogenase B [Salmonella typhimurium LT2] STM3680 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 2-414 -65.600 15  sp|P47895|AL1A3_HUMAN Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens GN=ALDH1A3 PE=1 SV=2
90-395 -83.900 34  sp|P54886|P5CS_HUMAN Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2 (Range: 451-750)
HGM_OVER 103-259 -2.340 11  HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;
NEW_HUMAN_DOMAINS 111-172 -4.570 14  tr|E9PHR9|E9PHR9_HUMAN Uncharacterized protein OS=Homo sapiens GN=PLSCR4 PE=4 SV=1 (Range: 56-113)
PDB1018 2-416 -119.000 46  1o20_A mol:protein length:427 Gamma-glutamyl phosphate reductase
PfamA32U 2-408 -65.100 15  PF00171.22; BETB_ECOLI/15-479; Aldehyde dehydrogenase family
SCOP207 2-416 -120.000 46  d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]}
VFDB 4-417 -100.000 36  [E] KOG4165 Gamma-glutamyl phosphate reductase
15 [F] COG0015 Adenylosuccinate lyase 431 COG1018 1-429 -111.000 25  [F] KOG2700 Adenylosuccinate lyase
CSGID 1-429 -114.000 38  IDP04633 gene: purB; adenylosuccinate lyase [Francisella tularensis subsp. tularensis SCHU S4] FTT0015 [Francisella tularensis subsp. tularensis SCHU S4]
H.sapiens 1-429 -107.000 26  sp|P30566|PUR8_HUMAN Adenylosuccinate lyase OS=Homo sapiens GN=ADSL PE=1 SV=2
HGM_OVER 226-275 -3.460 32  HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;
NEW_HUMAN_DOMAINS 233-292 -5.020 11  sp|Q8WVB3|HEXDC_HUMAN Hexosaminidase D OS=Homo sapiens GN=HEXDC PE=2 SV=3 (Range: 364-427)
PDB1018 1-429 -123.000 51  2x75_A mol:protein length:431 ADENYLOSUCCINATE LYASE
PfamA32U 2-286 -52.500 21  PF00206.20; FUMC2_BRADU/22-352; Lyase
297-419 -21.500 14  PF08328.11; A4SZU3_POLAQ/333-447; Adenylosuccinate lyase C-terminal
350-429 -31.100 40  PF10397.9; C7JHA0_ACEP3/358-441; Adenylosuccinate lyase C-terminus
SCOP207 2-429 -122.000 48  d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]}
VFDB 1-429 -111.000 25  [F] KOG2700 Adenylosuccinate lyase
16 [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit 344 COG1018 1-343 -101.000 21  [J] KOG2784 Phenylalanyl-tRNA synthetase, beta subunit
CSGID 1-343 -131.000 70  IDP04618 phenylalanyl-tRNA synthetase subunit alpha [Bacillus anthracis str. Sterne] BAS4456 [Bacillus anthracis str. Sterne]
H.sapiens 2-343 -104.000 22  sp|Q9Y285|SYFA_HUMAN Phenylalanyl-tRNA synthetase alpha chain OS=Homo sapiens GN=FARSA PE=1 SV=3
HGM_OVER 105-257 -3.760 6  PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)
NEW_HUMAN_DOMAINS 162-232 -6.240 16  sp|Q9BRP7|FDXA1_HUMAN Ferredoxin-fold anticodon-binding domain-containing protein 1 OS=Homo sapiens GN=FDXACB1 PE=2 SV=3 (Range: 341-413)
PDB1018 3-342 -125.000 53  4p71_C mol:protein length:338 Phenylalanine--tRNA ligase alpha subunit
PfamA32U 20-88 -18.800 40  PF02912.18; SYFA_IDILO/18-86; Aminoacyl tRNA synthetase class II, N-terminal domain
92-341 -113.000 100  PF01409.20; SYFA_BACHD/92-341; tRNA synthetases class II core domain (F)
SCOP207 6-91 -23.900 33  d3pcoc1 a.2.7.0 (C:5-90) automated matches {Escherichia coli [TaxId: 562]}
92-344 -106.000 40  d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]}
VFDB 1-343 -101.000 21  [J] KOG2784 Phenylalanyl-tRNA synthetase, beta subunit
17 [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases 430 COG1018 2-430 -119.000 29  [J] KOG0556 Aspartyl-tRNA synthetase
CSGID 1-430 -147.000 99  IDP05209 gene: asnC; asparaginyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] SACOL1494 [Staphylococcus aureus subsp. aureus COL]
H.sapiens 2-430 -118.000 32  sp|O43776|SYNC_HUMAN Asparaginyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=NARS PE=1 SV=1
HGM_OVER 130-244 -2.650 13  PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;
NEW_HUMAN_DOMAINS 142-240 -7.870 14  sp|Q8HWS3|RFX6_HUMAN DNA-binding protein RFX6 OS=Homo sapiens GN=RFX6 PE=1 SV=2 (Range: 770-871)
PDB1018 9-430 -130.000 34  1b8a_A mol:protein length:438 PROTEIN (ASPARTYL-TRNA SYNTHETASE)
PfamA32U 3-93 -10.400 18  PF04076.13; YGIW_ECOLI/25-127; Bacterial OB fold (BOF) protein
109-425 -65.600 21  PF00152.20; SYDND_NEIMB/118-567; tRNA synthetases class II (D, K and N)
SCOP207 1-103 -37.900 34  d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
102-430 -110.000 49  d1x54a2 d.104.1.0 (A:105-434) automated matches {Pyrococcus horikoshii [TaxId: 53953]}
VFDB 2-430 -119.000 29  [J] KOG0556 Aspartyl-tRNA synthetase
18 [J] COG0018 Arginyl-tRNA synthetase 556 COG1018 2-556 -117.000 25  [J] KOG1195 Arginyl-tRNA synthetase
CSGID 1-556 -169.000 61  IDP05453 arginyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS5213 [Bacillus anthracis str. Sterne]
H.sapiens 7-556 -121.000 19  sp|Q5T160|SYRM_HUMAN Probable arginyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=RARS2 PE=1 SV=1
HGM_OVER 313-550 -3.530 10  PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
NEW_HUMAN_DOMAINS 8-183 -47.000 10  sp|Q5D0E6|DALD3_HUMAN DALR anticodon-binding domain-containing protein 3 OS=Homo sapiens GN=DALRD3 PE=2 SV=2 (Range: 1-178)
PDB1018 7-556 -144.000 23  6ao8_A mol:protein length:580 Arginine--tRNA ligase
PfamA32U 9-95 -36.400 33  PF03485.16; SYRC_DROME/81-171; Arginyl tRNA synthetase N terminal domain
108-422 -62.200 20  PF00750.19; SYR_HAEIN/95-446; tRNA synthetases class I (R)
437-556 -52.500 38  PF05746.15; SYR_PYRFU/507-629; DALR anticodon binding domain
SCOP207 11-109 -30.900 22  d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal `additional` domain {Thermus thermophilus [TaxId: 274]}
117-429 -71.400 21  d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
432-556 -53.200 33  d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 2-556 -117.000 25  [J] KOG1195 Arginyl-tRNA synthetase
19 [E] COG0019 Diaminopimelate decarboxylase 436 COG1018 19-433 -81.100 21  [E] KOG0622 Ornithine decarboxylase
CSGID 7-434 -100.000 33  IDP90886 diaminopimelate decarboxylase [Vibrio cholerae O1 biovar eltor str. N16961] VC0125 [Vibrio cholerae O1 biovar El Tor str. N16961]
H.sapiens 19-433 -81.100 21  sp|P11926|DCOR_HUMAN Ornithine decarboxylase OS=Homo sapiens GN=ODC1 PE=1 SV=2
HGM_OVER 63-410 -4.230 13  PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]
NEW_HUMAN_DOMAINS 17-45 -5.050 20  sp|Q53GG5|PDLI3_HUMAN PDZ and LIM domain protein 3 OS=Homo sapiens GN=PDLIM3 PE=2 SV=1 (Range: 148-204)
PDB1018 4-434 -110.000 39  2o0t_A mol:protein length:467 Diaminopimelate decarboxylase
PfamA32U 35-391 -86.900 30  PF00278.22; Q088K9_SHEFN/29-368; Pyridoxal-dependent decarboxylase, C-terminal sheet domain
SCOP207 39-302 -75.000 39  d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
258-435 -68.100 34  d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 19-433 -81.100 21  [E] KOG0622 Ornithine decarboxylase
20 [I] COG0020 Undecaprenyl pyrophosphate synthase 248 COG1018 2-248 -97.800 29  [I] KOG1602 Cis-prenyltransferase
CSGID 2-245 -111.000 48  IDP04452 RecName: Full=Undecaprenyl pyrophosphate synthetase; Short=UPP synthetase; AltName: Full=Di-trans,poly-cis-decaprenylcistransferase; AltName: Full=Undecaprenyl diphosphate synthase; Short=UDS YPO1049 [Yersinia pestis CO92]
H.sapiens 1-248 -98.100 32  sp|Q86SQ9|DHDDS_HUMAN Dehydrodolichyl diphosphate synthase OS=Homo sapiens GN=DHDDS PE=2 SV=3
HGM_OVER 64-230 -3.520 14  PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;
NEW_HUMAN_DOMAINS 1-168 -5.020 10  sp|Q53R41|FAKD1_HUMAN FAST kinase domain-containing protein 1 OS=Homo sapiens GN=FASTKD1 PE=1 SV=1 (Range: 399-574)
PDB1018 2-244 -111.000 49  1jp3_A mol:protein length:253 undecaprenyl pyrophosphate synthase
PfamA32U 21-235 -105.000 48  PF01255.19; K9V8M2_9CYAN/27-247; Putative undecaprenyl diphosphate synthase
SCOP207 9-237 -110.000 44  d4h8ea_ c.101.1.1 (A:) automated matches {Staphylococcus aureus [TaxId: 158879]}
VFDB 2-248 -97.800 29  [I] KOG1602 Cis-prenyltransferase

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;