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Results: 1-20 of 8581next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 [H] COG0001 Glutamate-1-semialdehyde aminotransferase 411 HGM_OVER 170-328 -4.340 10  PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;
2 [E] COG0002 Acetylglutamate semialdehyde dehydrogenase 336 HGM_OVER 139-318 -4.330 14  PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;
3 [P] COG0003 Oxyanion-translocating ATPase 396 HGM_OVER 2-129 -3.940 13  PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152
4 [P] COG0004 Ammonia permease 470 HGM_OVER 162-447 -3.420 PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF
5 [F] COG0005 Purine nucleoside phosphorylase 271 HGM_OVER 1-115 -3.770 14  HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;
6 [E] COG0006 Xaa-Pro aminopeptidase 356 HGM_OVER 154-352 -4.200 14  HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;
7 [H] COG0007 Uroporphyrinogen-III methylase 292 HGM_OVER 65-257 -4.050 HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;
8 [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases 554 HGM_OVER 29-330 -3.130 10  PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)
9 [J] COG0009 Putative translation factor (SUA5) 346 HGM_OVER 2-183 -3.300 14  PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;
10 [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 306 HGM_OVER 90-157 -3.100 16  PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;
11 [S] COG0011 Uncharacterized conserved protein 94 HGM_OVER 20-81 -4.110 20  PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)
12 [J] COG0012 Predicted GTPase, probable translation factor 397 HGM_OVER 13-390 -2.830 10  PB034180 _Gut.Meta.Jp.0112129_ gi|163310377|dbj|BABD01000320.1||2 (+ 509:1679~0 complete)
13 [J] COG0013 Alanyl-tRNA synthetase 872 HGM_OVER 322-434 -4.140 10  PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]
14 [E] COG0014 Gamma-glutamyl phosphate reductase 417 HGM_OVER 103-259 -2.340 11  HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;
15 [F] COG0015 Adenylosuccinate lyase 431 HGM_OVER 226-275 -3.460 32  HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;
16 [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit 344 HGM_OVER 105-257 -3.760 PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)
17 [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases 430 HGM_OVER 130-244 -2.650 13  PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;
18 [J] COG0018 Arginyl-tRNA synthetase 556 HGM_OVER 313-550 -3.530 10  PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
19 [E] COG0019 Diaminopimelate decarboxylase 436 HGM_OVER 63-410 -4.230 13  PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]
20 [I] COG0020 Undecaprenyl pyrophosphate synthase 248 HGM_OVER 64-230 -3.520 14  PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Liu T, Rojas A, Ye Y, Godzik A. Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family. Protein Sci. 2003 Sep;12(9):1872-81.