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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92] 340 COG1018 1-340 -123.000 41  [L] COG4584 Transposase and inactivated derivatives
CSGID 1-340 -137.000 100  IDP04695 gene: YPCD1.01; putative transposase [Yersinia pestis CO92] YPCD1.01 [Yersinia pestis CO92]
H.sapiens 2-240 -19.300 12  sp|P63136|POK17_HUMAN HERV-K_11q22.1 provirus ancestral Pol protein OS=Homo sapiens PE=3 SV=1 (Range: 451-750)
81-296 -19.300 12  sp|P63135|POK12_HUMAN HERV-K_1q22 provirus ancestral Pol protein OS=Homo sapiens PE=3 SV=1 (Range: 601-900)
HGM_OVER 18-75 -5.060 14  HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;
NEW_HUMAN_DOMAINS 4-85 -7.390 15  sp|Q9BWC9|CC106_HUMAN Coiled-coil domain-containing protein 106 OS=Homo sapiens GN=CCDC106 PE=1 SV=1 (Range: 181-280)
PDB1018 3-339 -24.500 4fcy_A mol:protein length:529 Transposase
PfamA32U 1-91 -15.000 PF01710.16; P74195_SYNY3/1-119; Transposase
124-244 -14.700 PF00665.26; P71644_MYCTU/136-254; Integrase core domain
215-288 -13.900 16  PF13683.6; Q7DB06_CAUVC/199-265; Integrase core domain
SCOP207 8-42 -14.700 20  d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
10-101 -10.100 10  d2ao9a1 a.4.1.17 (A:13-132) Phage protein BC1890 {Bacillus cereus [TaxId: 1396]}
120-297 -19.900 16  d5cz1a1 c.55.3.2 (A:54-212) automated matches {Mouse mammary tumor virus [TaxId: 11757]}
VFDB 1-340 -123.000 41  [L] COG4584 Transposase and inactivated derivatives
2 gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92] 259 COG1018 16-205 -11.300 12  [R] COG2607 Predicted ATPase (AAA+ superfamily)
54-252 -30.700 19  [L] COG1484 DNA replication protein
CSGID 7-147 -61.600 40  IDP04353 gene: YPCD1.96c; putative transposase [Yersinia pestis CO92] YPCD1.96c [Yersinia pestis CO92]
21-257 -16.500 14  IDP90747 gene: dnaA; chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0001 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
H.sapiens 8-245 -14.500 15  sp|O43933|PEX1_HUMAN Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1 (Range: 451-750)
HGM_OVER 145-259 -3.860 11  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
NEW_HUMAN_DOMAINS 87-226 -6.970 12  sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
PDB1018 16-249 -22.200 4bwy_A mol:protein length:321 P4
65-254 -78.600 47  5bq5_A mol:protein length:189 Insertion sequence IS5376 putative ATP-binding protein
PfamA32U 5-228 -11.100 12  PF13337.6; R6V945_9CLOT/51-507; Putative ATP-dependent Lon protease
56-235 -73.900 31  PF01695.17; Y4IQ_SINFN/60-238; IstB-like ATP binding protein
SCOP207 1-252 -23.200 11  d2vhja_ c.37.1.11 (A:) automated matches {Pseudomonas phage [TaxId: 161736]}
VFDB 16-205 -11.300 12  [R] COG2607 Predicted ATPase (AAA+ superfamily)
54-252 -30.700 19  [L] COG1484 DNA replication protein
3 gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92] 130 COG1018 6-130 -11.600 [S] COG5465 Uncharacterized conserved protein
CSGID 1-130 -44.600 18  IDP90324 gene: sycE; secretion chaperone [Chlamydia trachomatis D/UW-3/CX] CT088 [Chlamydia trachomatis D/UW-3/CX]
H.sapiens 5-130 -5.950 10  sp|O00213|APBB1_HUMAN Amyloid beta A4 precursor protein-binding family B member 1 OS=Homo sapiens GN=APBB1 PE=1 SV=2 (Range: 451-710)
HGM_OVER 1-110 -4.520 10  PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;
NEW_HUMAN_DOMAINS 6-64 -6.630 11  sp|Q9NZM1|MYOF_HUMAN Myoferlin OS=Homo sapiens GN=MYOF PE=1 SV=1 (Range: 1675-1754)
PDB1018 1-130 -56.700 98  1n5b_A mol:protein length:132 YOPE regulator
PfamA32U 7-118 -37.100 17  PF05932.13; Q87P37_VIBPA/6-126; Tir chaperone protein (CesT) family
SCOP207 2-118 -52.900 100  d1jyaa_ d.198.1.1 (A:) YopE chaperone SycE {Yersinia pestis [TaxId: 632]}
VFDB 6-130 -11.600 [S] COG5465 Uncharacterized conserved protein
4 gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92] 219 COG1018 126-217 -6.600 [S] COG4718 Phage-related protein
CSGID 1-217 -17.100 21  IDP91748 Q933J5_PSEAE [Pseudomonas aeruginosa]
H.sapiens 106-218 -7.010 10  sp|Q96II8|LRCH3_HUMAN Leucine-rich repeat and calponin homology domain-containing protein 3 OS=Homo sapiens GN=LRCH3 PE=1 SV=2 (Range: 151-450)
HGM_OVER 158-211 -3.100 16  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
NEW_HUMAN_DOMAINS 102-219 -6.110 11  sp|Q5T6L9|CF070_HUMAN Transmembrane protein C6orf70 OS=Homo sapiens GN=C6orf70 PE=2 SV=1 (Range: 1-129)
PDB1018 30-79 -11.400 26  4jmf_A mol:protein length:50 Exoenzyme T
90-219 -60.100 100  1hy5_A mol:protein length:136 YERSINIA PESTIS VIRULENCE PROTEIN YOPE
PfamA32U 1-126 -23.700 100  PF09020.10; YOPE_YERPE/1-126; YopE, N terminal
127-195 -34.100 39  PF03545.13; Q9I788_PSEAE/132-201; Yersinia virulence determinant (YopE)
SCOP207 100-219 -57.400 100  d1hy5a_ a.24.11.1 (A:) YopE {Yersinia pestis [TaxId: 632]}
VFDB 126-217 -6.600 [S] COG4718 Phage-related protein
5 gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92] 98 COG1018 47-86 -7.170 17  [S] COG3771 Predicted membrane protein
CSGID 1-98 -97.200 100  IDP04061 gene: YPCD1.07; hypothetical protein YPCD1.07 [Yersinia pestis CO92] YPCD1.07 [Yersinia pestis CO92]
H.sapiens 27-84 -12.800 20  sp|Q9H5I5|PIEZ2_HUMAN(removed signalp:1-24) Protein PIEZO2 OS=Homo sapiens GN=FAM38B PE=2 SV=2 (Range: 1801-2100)
HGM_OVER 10-64 -5.190 23  PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;
NEW_HUMAN_DOMAINS 24-61 -6.460 13  sp|P86479|PR20C_HUMAN Proline-rich protein 20C OS=Homo sapiens GN=PRR20C PE=4 SV=1 (Range: 134-221)
PDB1018 27-84 -8.000 15  5z10_A mol:protein length:2547 Piezo-type mechanosensitive ion channel component 1
PfamA32U 18-98 -8.000 22  PF11200.8; A7AQJ9_BABBO/2-370; Protein of unknown function (DUF2981 topsan)
SCOP207 22-76 -6.430 10  d1yp5a_ b.34.2.0 (A:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 47-86 -7.170 17  [S] COG3771 Predicted membrane protein
6 gi|16082699|ref|NP_395145.1| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92] 99 COG1018 2-94 -62.000 31  [R] COG3668 Plasmid stabilization system protein
CSGID 1-99 -70.000 100  IDP04288 gene: YPCD1.08c; hypothetical protein YPCD1.08c [Yersinia pestis CO92] YPCD1.08c [Yersinia pestis CO92]
H.sapiens 3-83 -7.300 sp|Q9BU70|NAP1_HUMAN Nef-associated protein 1 OS=Homo sapiens GN=C9orf156 PE=1 SV=2
HGM_OVER 2-83 -3.570 PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;
NEW_HUMAN_DOMAINS 60-88 -5.570 20  sp|A3KMH1|K0564_HUMAN Uncharacterized protein KIAA0564 OS=Homo sapiens GN=KIAA0564 PE=1 SV=2 (Range: 1230-1332)
PDB1018 2-94 -60.000 30  3kxe_A mol:protein length:110 Toxin protein parE-1
PfamA32U 3-89 -31.600 20  PF05016.15; A0A023JAP0_SALTM/4-92; ParE toxin of type II toxin-antitoxin system, parDE
SCOP207 2-85 -11.600 14  d2a6sa_ d.298.1.1 (A:) Toxin YoeB {Escherichia coli [TaxId: 562]}
VFDB 2-94 -62.000 31  [R] COG3668 Plasmid stabilization system protein
7 gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92] 80 COG1018 1-79 -33.100 29  [K] COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
CSGID 1-80 -44.400 100  IDP04078 gene: YPCD1.09c; hypothetical protein YPCD1.09c [Yersinia pestis CO92] YPCD1.09c [Yersinia pestis CO92]
H.sapiens 3-60 -7.560 22  sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1 PE=1 SV=2 (Range: 151-450)
HGM_OVER 3-38 -6.170 22  HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;
NEW_HUMAN_DOMAINS 12-77 -5.760 sp|O00411|RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial OS=Homo sapiens GN=POLRMT PE=1 SV=2 (Range: 225-291)
PDB1018 1-78 -38.500 29  3kxe_C mol:protein length:88 Antitoxin protein parD-1
PfamA32U 1-79 -41.700 36  PF03693.14; PARD1_MYCTU/1-80; Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH
SCOP207 3-48 -17.600 32  d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 1-79 -33.100 29  [K] COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
8 gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92] 320 COG1018 2-156 -22.500 [L] KOG3388 Predicted transcription regulator/nuclease, contains ParB domain
76-320 -39.500 10  [K] COG1475 Predicted transcriptional regulators
CSGID 1-320 -97.600 100  IDP00432 gene: sopB; putative plasmid-partitioning control protein YPCD1.12c [Yersinia pestis CO92]
H.sapiens 31-158 -24.300 sp|Q9BYN0|SRXN1_HUMAN Sulfiredoxin-1 OS=Homo sapiens GN=SRXN1 PE=1 SV=2
HGM_OVER 140-212 -5.820 13  HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;
NEW_HUMAN_DOMAINS 151-219 -4.830 18  sp|Q14432|PDE3A_HUMAN cGMP-inhibited 3`,5`-cyclic phosphodiesterase A OS=Homo sapiens GN=PDE3A PE=1 SV=3 (Range: 315-401)
PDB1018 1-242 -43.100 16  4umk_A mol:protein length:240 PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB
145-318 -46.600 41  3mky_B mol:protein length:189 Protein sopB
PfamA32U 76-156 -26.800 25  PF02195.18; PARB_CHLTR/12-105; ParB-like nuclease domain
157-317 -25.300 11  PF07506.11; Q9F5B9_AGRRH/157-326; RepB plasmid partitioning protein
162-235 -27.600 63  PF18090.1; D7U710_VITVI/142-216; Centromere-binding protein HTH domain
SCOP207 76-159 -32.600 26  d1vz0a2 d.268.1.1 (A:23-115) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
152-262 -17.400 14  d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
VFDB 2-156 -22.500 [L] KOG3388 Predicted transcription regulator/nuclease, contains ParB domain
76-320 -39.500 10  [K] COG1475 Predicted transcriptional regulators
9 gi|16082703|ref|NP_395149.1| plasmid-partitioning protein SopA (YPCD1.13c) [Yersinia pestis CO92] 388 COG1018 64-387 -28.300 16  [D] COG0455 ATPases involved in chromosome partitioning
105-374 -64.500 19  [D] COG1192 ATPases involved in chromosome partitioning
CSGID 15-375 -17.700 12  IDP00101 gene: mrp; putative ATPase NT01SF2638 [Shigella flexneri 2a str. 2457T]
106-376 -73.000 18  IDP04519 gene: soj; sporulation initiation inhibitor protein soj [Clostridium perfringens ATCC 13124] CPF_2988 [Clostridium perfringens ATCC 13124]
H.sapiens 108-375 -19.600 12  sp|Q9Y5Y2|NUBP2_HUMAN Cytosolic Fe-S cluster assembly factor NUBP2 OS=Homo sapiens GN=NUBP2 PE=1 SV=1
HGM_OVER 1-105 -6.160 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;
NEW_HUMAN_DOMAINS 106-152 -6.000 17  sp|Q96MS3|GL1D1_HUMAN Glycosyltransferase 1 domain-containing protein 1 OS=Homo sapiens GN=GLT1D1 PE=2 SV=2 (Range: 1-57)
PDB1018 1-388 -75.500 18  3ez9_A mol:protein length:403 ParA
PfamA32U 106-294 -62.200 23  PF13614.6; R5N830_9FIRM/2-184; AAA domain
106-382 -34.300 12  PF07015.11; Q1M9M0_RHIL3/1-231; VirC1 protein
109-348 -61.500 20  PF01656.23; P72976_SYNY3/5-270; CobQ/CobB/MinD/ParA nucleotide binding domain
SCOP207 105-374 -68.400 25  d1wcv1_ c.37.1.0 (1:) automated matches {Thermus thermophilus [TaxId: 262724]}
VFDB 64-387 -28.300 16  [D] COG0455 ATPases involved in chromosome partitioning
105-374 -64.500 19  [D] COG1192 ATPases involved in chromosome partitioning
10 gi|40548797|ref|NP_954989.1| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92] 65 COG1018 1-64 -26.300 21  [L] COG2801 Transposase and inactivated derivatives
CSGID 1-65 -60.300 100  IDP04308 hypothetical protein YPCD1.14n [Yersinia pestis CO92] YPCD1.14n [Yersinia pestis CO92]
H.sapiens 2-49 -7.310 12  sp|Q8N6M0|OTU6B_HUMAN OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1
HGM_OVER 21-58 -4.010 HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;
NEW_HUMAN_DOMAINS 4-29 -6.710 15  tr|D6RIX7|D6RIX7_HUMAN Uncharacterized protein OS=Homo sapiens GN=USP46 PE=4 SV=1 (Range: 1-56)
PDB1018 2-49 -6.190 15  3phu_A mol:protein length:219 RNA-directed RNA polymerase L
PfamA32U 18-65 -24.900 27  PF13333.6; Q5F880_NEIG1/215-270; Integrase core domain
SCOP207 1-45 -5.870 20  d1tocr1 g.8.1.2 (R:1A-56) Ornithodorin {Soft tick (Ornithodoros moubata) [TaxId: 6938]}
VFDB 1-64 -26.300 21  [L] COG2801 Transposase and inactivated derivatives
11 gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92] 152 COG1018 1-152 -42.500 15  [L] COG2801 Transposase and inactivated derivatives
CSGID 1-152 -102.000 100  IDP04696 gene: YPCD1.15c; hypothetical protein YPCD1.15c [Yersinia pestis CO92] YPCD1.15c [Yersinia pestis CO92]
H.sapiens 22-149 -7.780 11  sp|Q6R2W3|SCND3_HUMAN SCAN domain-containing protein 3 OS=Homo sapiens GN=SCAND3 PE=2 SV=1 (Range: 151-450)
HGM_OVER 4-138 -4.490 13  PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152
NEW_HUMAN_DOMAINS 1-152 -6.660 15  sp|Q8IZY2|ABCA7_HUMAN ATP-binding cassette sub-family A member 7 OS=Homo sapiens GN=ABCA7 PE=1 SV=3 (Range: 239-549)
PDB1018 1-152 -16.300 11  4fcy_A mol:protein length:529 Transposase
PfamA32U 23-78 -25.100 21  PF13276.6; Q1WUI0_LACS1/209-271; HTH-like domain
99-152 -11.300 11  PF02914.15; TRA_HAEIN/267-485; Bacteriophage Mu transposase
SCOP207 103-152 -12.600 14  d1bcoa2 c.55.3.3 (A:258-480) mu transposase, core domain {Bacteriophage Mu [TaxId: 10677]}
VFDB 1-152 -42.500 15  [L] COG2801 Transposase and inactivated derivatives
12 gi|16082706|ref|NP_395152.1| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92] 107 COG1018 6-107 -46.000 27  [L] COG2963 Transposase and inactivated derivatives
CSGID 1-107 -58.700 100  IDP04041 gene: YPCD1.16c; hypothetical protein YPCD1.16c [Yersinia pestis CO92] YPCD1.16c [Yersinia pestis CO92]
H.sapiens 4-101 -14.800 11  sp|Q9P215|POGK_HUMAN Pogo transposable element with KRAB domain OS=Homo sapiens GN=POGK PE=1 SV=2 (Range: 151-450)
HGM_OVER 31-52 -5.590 18  HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;
NEW_HUMAN_DOMAINS 76-94 -5.810 26  sp|Q9NQV5|PRD11_HUMAN PR domain-containing protein 11 OS=Homo sapiens GN=PRDM11 PE=1 SV=2 (Range: 437-511)
PDB1018 9-95 -40.800 18  2jn6_A mol:protein length:97 Protein Cgl2762
PfamA32U 8-83 -40.600 44  PF01527.20; G3XCY0_PSEAE/3-78; Transposase
SCOP207 9-94 -42.300 18  d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
VFDB 6-107 -46.000 27  [L] COG2963 Transposase and inactivated derivatives
13 gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92] 182 COG1018 31-148 -9.900 15  [R] COG3271 Predicted double-glycine peptidase
CSGID 12-84 -6.210 17  IDP02136 gene: metJ; transcriptional repressor protein MetJ [Yersinia pestis CO92] YPO0114 [Yersinia pestis CO92]
H.sapiens 177-182 -6.630 50  sp|Q9H1M3|DB129_HUMAN(removed signalp:1-19) Beta-defensin 129 OS=Homo sapiens GN=DEFB129 PE=2 SV=1
HGM_OVER 1-182 -2.880 HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;
NEW_HUMAN_DOMAINS 8-117 -6.160 sp|Q68CP4|HGNAT_HUMAN Heparan-alpha-glucosaminide N-acetyltransferase OS=Homo sapiens GN=HGSNAT PE=1 SV=2 (Range: 59-193)
PDB1018 3-132 -10.900 1y4h_A mol:protein length:188 cysteine protease
PfamA32U 33-137 -20.000 15  PF15644.6; R4M122_9ACTN/808-932; Papain fold toxin 1, glutamine deamidase
SCOP207 14-132 -9.760 10  d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId: 1280]}
VFDB 31-148 -9.900 15  [R] COG3271 Predicted double-glycine peptidase
14 gi|16082709|ref|NP_395155.1| Yop targeted effector (YPCD1.20) [Yersinia pestis CO92] 322 COG1018 1-321 -8.450 [S] KOG4621 Uncharacterized conserved protein
CSGID 1-322 -103.000 100  IDP00451 gene: yopT; Yop targeted effector YPCD1.20 [Yersinia pestis CO92]
H.sapiens 108-319 -8.170 sp|Q96NT3|CV013_HUMAN Uncharacterized protein C22orf13 OS=Homo sapiens GN=C22orf13 PE=2 SV=2
HGM_OVER 137-321 -3.900 PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;
NEW_HUMAN_DOMAINS 258-321 -7.680 17  sp|Q8IY82|CC135_HUMAN Coiled-coil domain-containing protein 135 OS=Homo sapiens GN=CCDC135 PE=2 SV=3 (Range: 295-377)
PDB1018 125-314 -46.500 18  1ukf_A mol:protein length:188 Avirulence protein AVRPPH3
PfamA32U 103-320 -75.000 100  PF03543.14; YOPT_YERPE/103-320; Yersinia/Haemophilus virulence surface antigen
SCOP207 125-315 -47.100 18  d1ukfa1 d.3.1.10 (A:81-267) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
VFDB 1-321 -8.450 [S] KOG4621 Uncharacterized conserved protein
15 gi|16082710|ref|NP_395156.1| YopT chaperone (YPCD1.21) [Yersinia pestis CO92] 132 COG1018 7-131 -6.490 [S] COG5465 Uncharacterized conserved protein
CSGID 1-130 -34.500 12  IDP90324 gene: sycE; secretion chaperone [Chlamydia trachomatis D/UW-3/CX] CT088 [Chlamydia trachomatis D/UW-3/CX]
H.sapiens 14-130 -7.180 12  sp|Q969R8|ITFG2_HUMAN Integrin-alpha FG-GAP repeat-containing protein 2 OS=Homo sapiens GN=ITFG2 PE=2 SV=1
HGM_OVER 76-131 -4.270 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;
NEW_HUMAN_DOMAINS 68-130 -6.510 15  sp|Q969R8|ITFG2_HUMAN Integrin-alpha FG-GAP repeat-containing protein 2 OS=Homo sapiens GN=ITFG2 PE=2 SV=1 (Range: 335-447)
PDB1018 1-132 -57.200 98  2bho_A mol:protein length:130 CHAPERONE PROTEIN SYCT
PfamA32U 8-114 -31.300 15  PF05932.13; Q87P37_VIBPA/6-126; Tir chaperone protein (CesT) family
SCOP207 3-129 -40.900 17  d4gf3a_ d.198.1.1 (A:) automated matches {Yersinia pestis [TaxId: 632]}
VFDB 7-131 -6.490 [S] COG5465 Uncharacterized conserved protein
16 gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92] 129 COG1018 1-120 -6.660 19  [T] KOG1882 Transcriptional regulator SNIP1, contains FHA domain
CSGID 1-129 -95.300 100  IDP04118 gene: YPCD1.22c; hypothetical protein YPCD1.22c [Yersinia pestis CO92] YPCD1.22c [Yersinia pestis CO92]
H.sapiens 70-126 -7.930 29  sp|A8MVM7|YD021_HUMAN Putative uncharacterized protein ENSP00000382790 OS=Homo sapiens PE=5 SV=3 (Range: 451-634)
HGM_OVER 77-124 -2.990 12  PB012108 A3U600_9FLAO/1-189 PB012108; Pfam-B_12108;
NEW_HUMAN_DOMAINS 94-125 -8.100 25  sp|Q9ULL1|PKHG1_HUMAN Pleckstrin homology domain-containing family G member 1 OS=Homo sapiens GN=PLEKHG1 PE=1 SV=2 (Range: 834-944)
PDB1018 15-120 -6.930 17  5ix3_A mol:protein length:168 Diamine N-acetyltransferase
PfamA32U 74-124 -7.260 18  PF09871.9; F7XP05_METZD/16-103; Uncharacterized protein conserved in archaea (DUF2098 topsan)
SCOP207 82-117 -6.910 19  d1qrya_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
VFDB 1-120 -6.660 19  [T] KOG1882 Transcriptional regulator SNIP1, contains FHA domain
17 gi|16082712|ref|NP_395158.1| hypothetical protein (YPCD1.23) [Yersinia pestis CO92] 139 COG1018 14-91 -8.600 19  [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)
CSGID 1-139 -112.000 100  IDP04273 gene: YPCD1.23; hypothetical protein YPCD1.23 [Yersinia pestis CO92] YPCD1.23 [Yersinia pestis CO92]
H.sapiens 2-91 -9.400 15  sp|Q96T37|RBM15_HUMAN Putative RNA-binding protein 15 OS=Homo sapiens GN=RBM15 PE=1 SV=2 (Range: 1-300)
HGM_OVER 7-92 -4.020 16  PB012386 gi|82541244|ref|XP_724876.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii str. 17XNL]gi|23479680|gb|EAA16441.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii]
NEW_HUMAN_DOMAINS 11-92 -6.850 sp|O60303|K0556_HUMAN Uncharacterized protein KIAA0556 OS=Homo sapiens GN=KIAA0556 PE=1 SV=4 (Range: 1237-1365)
PDB1018 11-91 -8.900 14  2mxy_A mol:protein length:105 Heterogeneous nuclear ribonucleoproteins C1/C2
PfamA32U 2-113 -8.200 21  PF10682.9; UL40_HCMVM/7-220; Glycoprotein of human cytomegalovirus HHV-5
SCOP207 11-91 -8.460 16  d2rs8a1 d.58.7.1 (A:68-153) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 14-91 -8.600 19  [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)
18 gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92] 409 COG1018 9-409 -43.800 17  [T] KOG4641 FOG: Toll/interleukin receptor and related proteins containing LRR and TIR repeats
CSGID 16-398 -52.300 14  IDP91618 gene: ECs2674; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36097 [Escherichia coli O157:H7 str. Sakai]
H.sapiens 1-409 -45.200 24  sp|Q9BTT6|LRRC1_HUMAN Leucine-rich repeat-containing protein 1 OS=Homo sapiens GN=LRRC1 PE=1 SV=1
HGM_OVER 244-372 -0.925 PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)
NEW_HUMAN_DOMAINS 79-333 -8.090 sp|Q6PIJ6|FBX38_HUMAN F-box only protein 38 OS=Homo sapiens GN=FBXO38 PE=1 SV=3 (Range: 913-1188)
PDB1018 1-409 -73.600 94  1g9u_A mol:protein length:454 OUTER PROTEIN YOPM
PfamA32U 136-263 -20.400 18  PF14580.6; H3BFR2_LATCH/1-175; Leucine-rich repeat
SCOP207 3-249 -20.800 20  d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {French bean (Phaseolus vulgaris) [TaxId: 3885]}
34-386 -69.500 100  d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
VFDB 9-409 -43.800 17  [T] KOG4641 FOG: Toll/interleukin receptor and related proteins containing LRR and TIR repeats
19 gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92] 306 COG1018 83-304 -11.500 11  [S] COG5613 Uncharacterized conserved protein
CSGID 2-304 -9.780 13  IDP90401 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_579 [Chlamydia trachomatis D/UW-3/CX]
74-306 -78.200 30  IDP91309 putative translocator protein PopD [Vibrio parahaemolyticus RIMD 2210633] VP1656 [Vibrio parahaemolyticus RIMD 2210633]
H.sapiens 113-155 -7.720 16  sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapiens GN=NBR1 PE=1 SV=3 (Range: 601-900)
HGM_OVER 72-125 -4.290 PB012472 gi|62259485|gb|AAX77857.1| unknown protein [synthetic construct]
NEW_HUMAN_DOMAINS 86-140 -6.550 sp|Q7Z3U7|MON2_HUMAN Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 SV=2 (Range: 1018-1079)
PDB1018 82-147 -7.150 18  6b87_A mol:protein length:111 TMHC2_E
PfamA32U 13-306 -98.300 100  PF05844.12; O68699_YERPE/13-306; YopD protein
SCOP207 107-306 -5.920 d2pgca1 d.58.4.23 (A:1-206) Uncharacterized protein GOS_2596953 {Environmental samples [TaxId: 33858]}
VFDB 83-304 -11.500 11  [S] COG5613 Uncharacterized conserved protein
20 gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92] 401 COG1018 1-401 -112.000 100  [S] COG5613 Uncharacterized conserved protein
CSGID 1-401 -112.000 100  IDP04697 gene: yopB; secreted effector protein [Yersinia pestis CO92] YPCD1.29c [Yersinia pestis CO92]
H.sapiens 126-364 -7.880 10  sp|Q9BPW4|APOL4_HUMAN(removed signalp:1-21) Apolipoprotein L4 OS=Homo sapiens GN=APOL4 PE=2 SV=3
HGM_OVER 137-230 -4.240 18  PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;
NEW_HUMAN_DOMAINS 117-217 -5.030 11  tr|B4DKJ6|B4DKJ6_HUMAN Uncharacterized protein OS=Homo sapiens GN=CHMP7 PE=2 SV=1 (Range: 1-110)
PDB1018 47-266 -71.000 47  3wxx_B mol:protein length:219 AopB
PfamA32U 108-396 -13.500 PF05844.12; O68699_YERPE/13-306; YopD protein
SCOP207 143-244 -5.200 10  d2hhpa1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 1-401 -112.000 100  [S] COG5613 Uncharacterized conserved protein


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24