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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4334next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92] 340 CSGID 1-340 -137.000 100  IDP04695 gene: YPCD1.01; putative transposase [Yersinia pestis CO92] YPCD1.01 [Yersinia pestis CO92]
2 gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92] 259 CSGID 7-147 -61.600 40  IDP04353 gene: YPCD1.96c; putative transposase [Yersinia pestis CO92] YPCD1.96c [Yersinia pestis CO92]
21-257 -16.500 14  IDP90747 gene: dnaA; chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0001 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
3 gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92] 130 CSGID 1-130 -44.600 18  IDP90324 gene: sycE; secretion chaperone [Chlamydia trachomatis D/UW-3/CX] CT088 [Chlamydia trachomatis D/UW-3/CX]
4 gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92] 219 CSGID 1-217 -17.100 21  IDP91748 Q933J5_PSEAE [Pseudomonas aeruginosa]
5 gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92] 98 CSGID 1-98 -97.200 100  IDP04061 gene: YPCD1.07; hypothetical protein YPCD1.07 [Yersinia pestis CO92] YPCD1.07 [Yersinia pestis CO92]
6 gi|16082699|ref|NP_395145.1| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92] 99 CSGID 1-99 -70.000 100  IDP04288 gene: YPCD1.08c; hypothetical protein YPCD1.08c [Yersinia pestis CO92] YPCD1.08c [Yersinia pestis CO92]
7 gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92] 80 CSGID 1-80 -44.400 100  IDP04078 gene: YPCD1.09c; hypothetical protein YPCD1.09c [Yersinia pestis CO92] YPCD1.09c [Yersinia pestis CO92]
8 gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92] 320 CSGID 1-320 -97.600 100  IDP00432 gene: sopB; putative plasmid-partitioning control protein YPCD1.12c [Yersinia pestis CO92]
9 gi|16082703|ref|NP_395149.1| plasmid-partitioning protein SopA (YPCD1.13c) [Yersinia pestis CO92] 388 CSGID 15-375 -17.700 12  IDP00101 gene: mrp; putative ATPase NT01SF2638 [Shigella flexneri 2a str. 2457T]
106-376 -73.000 18  IDP04519 gene: soj; sporulation initiation inhibitor protein soj [Clostridium perfringens ATCC 13124] CPF_2988 [Clostridium perfringens ATCC 13124]
10 gi|40548797|ref|NP_954989.1| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92] 65 CSGID 1-65 -60.300 100  IDP04308 hypothetical protein YPCD1.14n [Yersinia pestis CO92] YPCD1.14n [Yersinia pestis CO92]
11 gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92] 152 CSGID 1-152 -102.000 100  IDP04696 gene: YPCD1.15c; hypothetical protein YPCD1.15c [Yersinia pestis CO92] YPCD1.15c [Yersinia pestis CO92]
12 gi|16082706|ref|NP_395152.1| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92] 107 CSGID 1-107 -58.700 100  IDP04041 gene: YPCD1.16c; hypothetical protein YPCD1.16c [Yersinia pestis CO92] YPCD1.16c [Yersinia pestis CO92]
13 gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92] 182 CSGID 12-84 -6.210 17  IDP02136 gene: metJ; transcriptional repressor protein MetJ [Yersinia pestis CO92] YPO0114 [Yersinia pestis CO92]
14 gi|16082709|ref|NP_395155.1| Yop targeted effector (YPCD1.20) [Yersinia pestis CO92] 322 CSGID 1-322 -103.000 100  IDP00451 gene: yopT; Yop targeted effector YPCD1.20 [Yersinia pestis CO92]
15 gi|16082710|ref|NP_395156.1| YopT chaperone (YPCD1.21) [Yersinia pestis CO92] 132 CSGID 1-130 -34.500 12  IDP90324 gene: sycE; secretion chaperone [Chlamydia trachomatis D/UW-3/CX] CT088 [Chlamydia trachomatis D/UW-3/CX]
16 gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92] 129 CSGID 1-129 -95.300 100  IDP04118 gene: YPCD1.22c; hypothetical protein YPCD1.22c [Yersinia pestis CO92] YPCD1.22c [Yersinia pestis CO92]
17 gi|16082712|ref|NP_395158.1| hypothetical protein (YPCD1.23) [Yersinia pestis CO92] 139 CSGID 1-139 -112.000 100  IDP04273 gene: YPCD1.23; hypothetical protein YPCD1.23 [Yersinia pestis CO92] YPCD1.23 [Yersinia pestis CO92]
18 gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92] 409 CSGID 16-398 -52.300 14  IDP91618 gene: ECs2674; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB36097 [Escherichia coli O157:H7 str. Sakai]
19 gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92] 306 CSGID 2-304 -9.780 13  IDP90401 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_579 [Chlamydia trachomatis D/UW-3/CX]
74-306 -78.200 30  IDP91309 putative translocator protein PopD [Vibrio parahaemolyticus RIMD 2210633] VP1656 [Vibrio parahaemolyticus RIMD 2210633]
20 gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92] 401 CSGID 1-401 -112.000 100  IDP04697 gene: yopB; secreted effector protein [Yersinia pestis CO92] YPCD1.29c [Yersinia pestis CO92]


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.