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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4332next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92] 340 HGM_OVER 18-75 -5.060 14  HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;
2 gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92] 259 HGM_OVER 145-259 -3.860 11  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
3 gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92] 130 HGM_OVER 1-110 -4.520 10  PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;
4 gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92] 219 HGM_OVER 158-211 -3.100 16  PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]
5 gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92] 98 HGM_OVER 10-64 -5.190 23  PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;
6 gi|16082699|ref|NP_395145.1| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92] 99 HGM_OVER 2-83 -3.570 PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;
7 gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92] 80 HGM_OVER 3-38 -6.170 22  HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;
8 gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92] 320 HGM_OVER 140-212 -5.820 13  HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;
9 gi|16082703|ref|NP_395149.1| plasmid-partitioning protein SopA (YPCD1.13c) [Yersinia pestis CO92] 388 HGM_OVER 1-105 -6.160 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;
10 gi|40548797|ref|NP_954989.1| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92] 65 HGM_OVER 21-58 -4.010 HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;
11 gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92] 152 HGM_OVER 4-138 -4.490 13  PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152
12 gi|16082706|ref|NP_395152.1| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92] 107 HGM_OVER 31-52 -5.590 18  HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;
13 gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92] 182 HGM_OVER 1-182 -2.880 HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;
14 gi|16082709|ref|NP_395155.1| Yop targeted effector (YPCD1.20) [Yersinia pestis CO92] 322 HGM_OVER 137-321 -3.900 PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;
15 gi|16082710|ref|NP_395156.1| YopT chaperone (YPCD1.21) [Yersinia pestis CO92] 132 HGM_OVER 76-131 -4.270 HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;
16 gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92] 129 HGM_OVER 77-124 -2.990 12  PB012108 A3U600_9FLAO/1-189 PB012108; Pfam-B_12108;
17 gi|16082712|ref|NP_395158.1| hypothetical protein (YPCD1.23) [Yersinia pestis CO92] 139 HGM_OVER 7-92 -4.020 16  PB012386 gi|82541244|ref|XP_724876.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii str. 17XNL]gi|23479680|gb|EAA16441.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii]
18 gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92] 409 HGM_OVER 244-372 -0.925 PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)
19 gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92] 306 HGM_OVER 72-125 -4.290 PB012472 gi|62259485|gb|AAX77857.1| unknown protein [synthetic construct]
20 gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92] 401 HGM_OVER 137-230 -4.240 18  PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. VISSA: a program to visualize structural features from structure sequence alignment. Bioinformatics. 2006 Apr 1;22(7):887-8. Epub 2006 Jan 24.