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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 4334< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 gi|16082718|ref|NP_395164.1| secretion chaperone (YPCD1.30c) [Yersinia pestis CO92] 168 NEW_HUMAN_DOMAINS 16-167 -11.700 13  sp|O43242|PSMD3_HUMAN 26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2 (Range: 162-355)
38-136 -25.500 19  sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 (Range: 717-845)
22 gi|16082719|ref|NP_395165.1| secreted effector protein (YPCD1.31c) [Yersinia pestis CO92] 326 NEW_HUMAN_DOMAINS 263-326 -5.890 17  sp|Q8IY31|IFT20_HUMAN Intraflagellar transport protein 20 homolog OS=Homo sapiens GN=IFT20 PE=1 SV=1 (Range: 1-81)
23 gi|16082720|ref|NP_395166.1| low calcium response protein G (YPCD1.32c) [Yersinia pestis CO92] 95 NEW_HUMAN_DOMAINS 1-70 -7.140 17  sp|Q5VZK9|LR16A_HUMAN Leucine-rich repeat-containing protein 16A OS=Homo sapiens GN=LRRC16A PE=1 SV=1 (Range: 671-790)
24 gi|16082721|ref|NP_395167.1| low calcium response protein R (YPCD1.33c) [Yersinia pestis CO92] 146 NEW_HUMAN_DOMAINS 43-134 -6.520 16  sp|Q96EK7|F120B_HUMAN Constitutive coactivator of peroxisome proliferator-activated receptor gamma OS=Homo sapiens GN=FAM120B PE=1 SV=1 (Range: 236-325)
25 gi|16082722|ref|NP_395168.1| low calcium response protein D (YPCD1.34c) [Yersinia pestis CO92] 704 NEW_HUMAN_DOMAINS 137-252 -5.030 16  sp|Q8N485|LIX1_HUMAN Protein limb expression 1 homolog OS=Homo sapiens GN=LIX1 PE=2 SV=2 (Range: 1-116)
26 gi|16082723|ref|NP_395169.1| hypothetical protein (YPCD1.35c) [Yersinia pestis CO92] 114 NEW_HUMAN_DOMAINS 9-110 -27.900 13  sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 (Range: 717-845)
27 gi|16082724|ref|NP_395170.1| hypothetical protein (YPCD1.36c) [Yersinia pestis CO92] 122 NEW_HUMAN_DOMAINS 44-107 -5.600 14  sp|Q8IY22|CMIP_HUMAN C-Maf-inducing protein OS=Homo sapiens GN=CMIP PE=1 SV=3 (Range: 429-542)
28 gi|16082725|ref|NP_395171.1| hypothetical protein (YPCD1.37c) [Yersinia pestis CO92] 123 NEW_HUMAN_DOMAINS 1-117 -6.550 13  sp|Q96MH7|CE034_HUMAN Uncharacterized protein C5orf34 OS=Homo sapiens GN=C5orf34 PE=2 SV=2 (Range: 1-150)
29 gi|16082726|ref|NP_395172.1| Yop secretion and targeting control protein (YPCD1.38c) [Yersinia pestis CO92] 92 NEW_HUMAN_DOMAINS 1-80 -6.080 10  sp|Q86UW7|CAPS2_HUMAN Calcium-dependent secretion activator 2 OS=Homo sapiens GN=CADPS2 PE=1 SV=2 (Range: 124-211)
30 gi|16082727|ref|NP_395173.1| secretion control protein (YPCD1.39c) [Yersinia pestis CO92] 293 NEW_HUMAN_DOMAINS 71-293 -6.100 sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 (Range: 376-658)
31 gi|16082728|ref|NP_395174.1| type III secretion system ATPase (YPCD1.40) [Yersinia pestis CO92] 439 NEW_HUMAN_DOMAINS 139-258 -5.460 12  sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2 (Range: 687-863)
32 gi|16082729|ref|NP_395175.1| type III secretion apparatus component (YPCD1.41) [Yersinia pestis CO92] 154 NEW_HUMAN_DOMAINS 56-148 -7.750 14  sp|Q96ER9|CCD51_HUMAN Coiled-coil domain-containing protein 51 OS=Homo sapiens GN=CCDC51 PE=1 SV=2 (Range: 57-180)
33 gi|16082730|ref|NP_395176.1| type III secretion apparatus component (YPCD1.42) [Yersinia pestis CO92] 455 NEW_HUMAN_DOMAINS 369-443 -4.610 16  sp|Q8WV92|MITD1_HUMAN MIT domain-containing protein 1 OS=Homo sapiens GN=MITD1 PE=1 SV=1 (Range: 106-249)
34 gi|16082731|ref|NP_395177.1| type III secretion system protein (YPCD1.43) [Yersinia pestis CO92] 307 NEW_HUMAN_DOMAINS 169-299 -6.410 14  sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens GN=MIB2 PE=1 SV=3 (Range: 289-451)
35 gi|16082732|ref|NP_395178.1|(removed signalp:1-34) type III secretion system protein (YPCD1.44) [Yersinia pestis CO92] 183 NEW_HUMAN_DOMAINS 76-124 -6.030 18  sp|Q9NWW7|CB042_HUMAN Uncharacterized protein C2orf42 OS=Homo sapiens GN=C2orf42 PE=2 SV=1 (Range: 493-574)
36 gi|16082733|ref|NP_395179.1|(removed signalp:1-28) needle complex export protein (YPCD1.45) [Yersinia pestis CO92] 60 NEW_HUMAN_DOMAINS 8-47 -6.240 17  tr|F5H5C0|F5H5C0_HUMAN Uncharacterized protein OS=Homo sapiens GN=PEX5 PE=4 SV=1 (Range: 67-180)
37 gi|16082734|ref|NP_395180.1| needle complex export protein (YPCD1.46) [Yersinia pestis CO92] 261 NEW_HUMAN_DOMAINS 181-218 -4.650 sp|Q9UPZ3|HPS5_HUMAN Hermansky-Pudlak syndrome 5 protein OS=Homo sapiens GN=HPS5 PE=1 SV=2 (Range: 508-565)
38 gi|16082735|ref|NP_395181.1| needle complex export protein (YPCD1.47) [Yersinia pestis CO92] 354 NEW_HUMAN_DOMAINS 212-340 -5.530 tr|B4DF73|B4DF73_HUMAN Uncharacterized protein OS=Homo sapiens GN=PTCD3 PE=2 SV=1 (Range: 61-208)
39 gi|16082736|ref|NP_395182.1|(removed signalp:1-23) needle complex outer membrane lipoprotein precursor (YPCD1.48) [Yersinia pestis CO92] 108 NEW_HUMAN_DOMAINS 16-108 -8.130 12  tr|B4DR81|B4DR81_HUMAN Uncharacterized protein OS=Homo sapiens GN=TCTN3 PE=2 SV=1 (Range: 301-431)
40 gi|16082737|ref|NP_395183.1| transcriptional regulator (YPCD1.49) [Yersinia pestis CO92] 271 NEW_HUMAN_DOMAINS 19-85 -8.440 17  sp|P38435|VKGC_HUMAN Vitamin K-dependent gamma-carboxylase OS=Homo sapiens GN=GGCX PE=1 SV=2 (Range: 505-613)


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.