current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

Page size:   Sort by score   Show only entries containing string:

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4334next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92] 340 PDB1018 3-339 -24.500 4fcy_A mol:protein length:529 Transposase
2 gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92] 259 PDB1018 16-249 -22.200 4bwy_A mol:protein length:321 P4
65-254 -78.600 47  5bq5_A mol:protein length:189 Insertion sequence IS5376 putative ATP-binding protein
3 gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92] 130 PDB1018 1-130 -56.700 98  1n5b_A mol:protein length:132 YOPE regulator
4 gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92] 219 PDB1018 30-79 -11.400 26  4jmf_A mol:protein length:50 Exoenzyme T
90-219 -60.100 100  1hy5_A mol:protein length:136 YERSINIA PESTIS VIRULENCE PROTEIN YOPE
5 gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92] 98 PDB1018 27-84 -8.000 15  5z10_A mol:protein length:2547 Piezo-type mechanosensitive ion channel component 1
6 gi|16082699|ref|NP_395145.1| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92] 99 PDB1018 2-94 -60.000 30  3kxe_A mol:protein length:110 Toxin protein parE-1
7 gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92] 80 PDB1018 1-78 -38.500 29  3kxe_C mol:protein length:88 Antitoxin protein parD-1
8 gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92] 320 PDB1018 1-242 -43.100 16  4umk_A mol:protein length:240 PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB
145-318 -46.600 41  3mky_B mol:protein length:189 Protein sopB
9 gi|16082703|ref|NP_395149.1| plasmid-partitioning protein SopA (YPCD1.13c) [Yersinia pestis CO92] 388 PDB1018 1-388 -75.500 18  3ez9_A mol:protein length:403 ParA
10 gi|40548797|ref|NP_954989.1| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92] 65 PDB1018 2-49 -6.190 15  3phu_A mol:protein length:219 RNA-directed RNA polymerase L
11 gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92] 152 PDB1018 1-152 -16.300 11  4fcy_A mol:protein length:529 Transposase
12 gi|16082706|ref|NP_395152.1| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92] 107 PDB1018 9-95 -40.800 18  2jn6_A mol:protein length:97 Protein Cgl2762
13 gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92] 182 PDB1018 3-132 -10.900 1y4h_A mol:protein length:188 cysteine protease
14 gi|16082709|ref|NP_395155.1| Yop targeted effector (YPCD1.20) [Yersinia pestis CO92] 322 PDB1018 125-314 -46.500 18  1ukf_A mol:protein length:188 Avirulence protein AVRPPH3
15 gi|16082710|ref|NP_395156.1| YopT chaperone (YPCD1.21) [Yersinia pestis CO92] 132 PDB1018 1-132 -57.200 98  2bho_A mol:protein length:130 CHAPERONE PROTEIN SYCT
16 gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92] 129 PDB1018 15-120 -6.930 17  5ix3_A mol:protein length:168 Diamine N-acetyltransferase
17 gi|16082712|ref|NP_395158.1| hypothetical protein (YPCD1.23) [Yersinia pestis CO92] 139 PDB1018 11-91 -8.900 14  2mxy_A mol:protein length:105 Heterogeneous nuclear ribonucleoproteins C1/C2
18 gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92] 409 PDB1018 1-409 -73.600 94  1g9u_A mol:protein length:454 OUTER PROTEIN YOPM
19 gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92] 306 PDB1018 82-147 -7.150 18  6b87_A mol:protein length:111 TMHC2_E
20 gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92] 401 PDB1018 47-266 -71.000 47  3wxx_B mol:protein length:219 AopB


FFAS is supported by the NIH grant R01-GM087218-01
1 2 5 3 1 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.