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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4334next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92] 340 VFDB 1-340 -123.000 41  [L] COG4584 Transposase and inactivated derivatives
2 gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92] 259 VFDB 16-205 -11.300 12  [R] COG2607 Predicted ATPase (AAA+ superfamily)
54-252 -30.700 19  [L] COG1484 DNA replication protein
3 gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92] 130 VFDB 6-130 -11.600 [S] COG5465 Uncharacterized conserved protein
4 gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92] 219 VFDB 126-217 -6.600 [S] COG4718 Phage-related protein
5 gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92] 98 VFDB 47-86 -7.170 17  [S] COG3771 Predicted membrane protein
6 gi|16082699|ref|NP_395145.1| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92] 99 VFDB 2-94 -62.000 31  [R] COG3668 Plasmid stabilization system protein
7 gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92] 80 VFDB 1-79 -33.100 29  [K] COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
8 gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92] 320 VFDB 2-156 -22.500 [L] KOG3388 Predicted transcription regulator/nuclease, contains ParB domain
76-320 -39.500 10  [K] COG1475 Predicted transcriptional regulators
9 gi|16082703|ref|NP_395149.1| plasmid-partitioning protein SopA (YPCD1.13c) [Yersinia pestis CO92] 388 VFDB 64-387 -28.300 16  [D] COG0455 ATPases involved in chromosome partitioning
105-374 -64.500 19  [D] COG1192 ATPases involved in chromosome partitioning
10 gi|40548797|ref|NP_954989.1| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92] 65 VFDB 1-64 -26.300 21  [L] COG2801 Transposase and inactivated derivatives
11 gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92] 152 VFDB 1-152 -42.500 15  [L] COG2801 Transposase and inactivated derivatives
12 gi|16082706|ref|NP_395152.1| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92] 107 VFDB 6-107 -46.000 27  [L] COG2963 Transposase and inactivated derivatives
13 gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92] 182 VFDB 31-148 -9.900 15  [R] COG3271 Predicted double-glycine peptidase
14 gi|16082709|ref|NP_395155.1| Yop targeted effector (YPCD1.20) [Yersinia pestis CO92] 322 VFDB 1-321 -8.450 [S] KOG4621 Uncharacterized conserved protein
15 gi|16082710|ref|NP_395156.1| YopT chaperone (YPCD1.21) [Yersinia pestis CO92] 132 VFDB 7-131 -6.490 [S] COG5465 Uncharacterized conserved protein
16 gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92] 129 VFDB 1-120 -6.660 19  [T] KOG1882 Transcriptional regulator SNIP1, contains FHA domain
17 gi|16082712|ref|NP_395158.1| hypothetical protein (YPCD1.23) [Yersinia pestis CO92] 139 VFDB 14-91 -8.600 19  [A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)
18 gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92] 409 VFDB 9-409 -43.800 17  [T] KOG4641 FOG: Toll/interleukin receptor and related proteins containing LRR and TIR repeats
19 gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92] 306 VFDB 83-304 -11.500 11  [S] COG5613 Uncharacterized conserved protein
20 gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92] 401 VFDB 1-401 -112.000 100  [S] COG5613 Uncharacterized conserved protein


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.