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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] (Range: 1-117) 117 COG1018 58-111 -8.940 16  [R] COG4797 Predicted regulatory domain of a methyltransferase
CSGID 26-117 -35.600 14  IDP06550 set218a-004 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
H.sapiens 9-113 -6.790 sp|O94901|SUN1_HUMAN SUN domain-containing protein 1 OS=Homo sapiens GN=SUN1 PE=1 SV=3 (Range: 151-450)
HGM_OVER 49-112 -14.400 17  PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;
NEW_HUMAN_DOMAINS 67-111 -6.520 20  tr|B7Z293|B7Z293_HUMAN Uncharacterized protein OS=Homo sapiens GN=ZMYND11 PE=2 SV=1 (Range: 1-99)
PDB1018 21-112 -30.000 17  5sxy_A mol:protein length:94 Bifunctional coenzyme PQQ synthesis protein C/D
PfamA32U 50-111 -25.200 18  PF05402.12; I3UDV1_ADVKW/25-86; Coenzyme PQQ synthesis protein D (PqqD)
SCOP207 62-116 -7.870 18  d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}
VFDB 58-111 -8.940 16  [R] COG4797 Predicted regulatory domain of a methyltransferase
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] (Range: 1-74) 74 COG1018 34-71 -5.160 21  [S] COG4331 Predicted membrane protein
CSGID 47-74 -6.610 32  IDP05388 hypothetical protein BA_2383 [Bacillus anthracis str. Ames] BA_2383 [Bacillus anthracis str. Ames]
H.sapiens 5-73 -7.220 13  sp|Q9Y215|COLQ_HUMAN(removed signalp:1-29) Acetylcholinesterase collagenic tail peptide OS=Homo sapiens GN=COLQ PE=1 SV=2
HGM_OVER 47-72 -4.690 30  PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)
NEW_HUMAN_DOMAINS 39-74 -10.500 25  sp|P04035|HMDH_HUMAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Homo sapiens GN=HMGCR PE=1 SV=1 (Range: 280-425)
PDB1018 55-73 -8.230 26  6fti_1 mol:protein length:162 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,RPN1
PfamA32U 37-74 -7.010 18  PF16979.5; E2AFW7_CAMFO/312-435; SAPK-interacting protein 1 (Sin1), Pleckstrin-homology
SCOP207 30-65 -5.970 30  d1pp9e2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
VFDB 34-71 -5.160 21  [S] COG4331 Predicted membrane protein
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] (Range: 1-447) 447 COG1018 9-440 -82.900 18  [V] COG0534 Na+-driven multidrug efflux pump
CSGID 1-442 -95.300 20  IDP05138 putative drug/sodium antiporter [Clostridium difficile 630] CD2874 [Peptoclostridium difficile 630]
H.sapiens 14-446 -55.400 18  sp|Q96FL8|S47A1_HUMAN Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1
HGM_OVER 22-101 -2.520 14  PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]
NEW_HUMAN_DOMAINS 1-42 -4.030 19  sp|Q86UW7|CAPS2_HUMAN Calcium-dependent secretion activator 2 OS=Homo sapiens GN=CADPS2 PE=1 SV=2 (Range: 895-954)
PDB1018 1-445 -94.900 18  4z3n_A mol:protein length:499 Putative drug/sodium antiporter
PfamA32U 14-345 -18.200 PF07260.11; F1Q528_DANRE/1-344; Progressive ankylosis protein (ANKH)
44-447 -26.400 11  PF03023.14; MURJ_ECOLI/28-479; Lipid II flippase MurJ
SCOP207 2-444 -94.800 21  d5c6na_ f.61.1.1 (A:) DinF {Bacillus halodurans [TaxId: 272558]}
VFDB 9-440 -82.900 18  [V] COG0534 Na+-driven multidrug efflux pump
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] (Range: 1-99) 99 COG1018 1-99 -64.000 55  [J] COG0199 Ribosomal protein S14
CSGID 41-99 -43.300 39  IDP04080 30S ribosomal protein S14 [Bacillus anthracis str. Sterne] BAS0123 [Bacillus anthracis str. Sterne]
H.sapiens 4-99 -55.600 32  sp|O60783|RT14_HUMAN 28S ribosomal protein S14, mitochondrial OS=Homo sapiens GN=MRPS14 PE=1 SV=1
HGM_OVER 1-99 -4.430 PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;
NEW_HUMAN_DOMAINS 3-99 -7.660 15  sp|Q6UB99|ANR11_HUMAN Ankyrin repeat domain-containing protein 11 OS=Homo sapiens GN=ANKRD11 PE=1 SV=3 (Range: 2455-2663)
PDB1018 1-99 -63.400 56  3j9y_n mol:protein length:102 30S ribosomal protein S14
PfamA32U 45-98 -38.200 57  PF00253.21; RR14_PHATC/46-99; Ribosomal protein S14p/S29e
SCOP207 2-99 -62.200 55  d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli [TaxId: 562]}
VFDB 1-99 -64.000 55  [J] COG0199 Ribosomal protein S14
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] (Range: 1-130) 130 COG1018 7-130 -38.900 19  [F] COG1051 ADP-ribose pyrophosphatase
CSGID 1-129 -77.700 29  IDP02584 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase [Salmonella typhimurium LT2] STM1301 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 6-130 -44.300 16  sp|P36639|8ODP_HUMAN 7,8-dihydro-8-oxoguanine triphosphatase OS=Homo sapiens GN=NUDT1 PE=1 SV=3
HGM_OVER 2-86 -6.020 12  HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;
NEW_HUMAN_DOMAINS 34-59 -7.830 15  sp|Q7Z404|TMC4_HUMAN Transmembrane channel-like protein 4 OS=Homo sapiens GN=TMC4 PE=2 SV=3 (Range: 271-348)
PDB1018 1-130 -83.600 99  3gwy_A mol:protein length:140 Putative CTP pyrophosphohydrolase
PfamA32U 7-126 -39.000 11  PF14815.6; R5EBJ1_9FIRM/149-257; NUDIX domain
SCOP207 2-129 -83.600 100  d3gwya1 d.113.1.0 (A:2-129) automated matches {Bacteroides fragilis [TaxId: 272559]}
VFDB 7-130 -38.900 19  [F] COG1051 ADP-ribose pyrophosphatase
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] (Range: 1-110) 110 COG1018 5-78 -8.930 [U] KOG4112 Signal peptidase subunit
CSGID 8-77 -6.060 20  IDP02016 hypothetical protein YPO0252 [Yersinia pestis CO92] YPO0252 [Yersinia pestis CO92]
H.sapiens 11-89 -8.820 23  sp|P31431|SDC4_HUMAN(removed signalp:1-18) Syndecan-4 OS=Homo sapiens GN=SDC4 PE=1 SV=2
HGM_OVER 2-106 -77.700 60  PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;
NEW_HUMAN_DOMAINS 6-24 -7.310 36  sp|Q8WUU8|TM174_HUMAN Transmembrane protein 174 OS=Homo sapiens GN=TMEM174 PE=2 SV=1 (Range: 119-198)
PDB1018 9-79 -7.710 16  4xk8_H mol:protein length:90 Putative uncharacterized protein
PfamA32U 6-96 -74.700 57  PF13571.6; I4A2I7_ORNRL/10-100; Domain of unknown function (DUF4133 topsan)
SCOP207 1-51 -7.000 13  d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli [TaxId: 562]}
VFDB 5-78 -8.930 [U] KOG4112 Signal peptidase subunit
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] (Range: 1-415) 415 COG1018 2-415 -95.700 52  [O] COG1219 ATP-dependent protease Clp, ATPase subunit
CSGID 6-415 -104.000 51  IDP02333 gene: clpX; ATP-dependent protease ATP-binding subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0625 [Francisella tularensis subsp. tularensis SCHU S4]
H.sapiens 2-186 -39.500 21  sp|O76031|CLPX_HUMAN ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Homo sapiens GN=CLPX PE=1 SV=2 (Range: 1-300)
50-278 -50.000 51  sp|O76031|CLPX_HUMAN ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Homo sapiens GN=CLPX PE=1 SV=2 (Range: 151-450)
128-406 -75.500 46  sp|O76031|CLPX_HUMAN ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial OS=Homo sapiens GN=CLPX PE=1 SV=2 (Range: 301-600)
HGM_OVER 68-377 -5.350 10  PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]
NEW_HUMAN_DOMAINS 32-135 -7.490 sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3 (Range: 217-335)
PDB1018 15-415 -40.000 13  1ksf_X mol:protein length:758 ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA
58-415 -97.100 51  1um8_A mol:protein length:376 ATP-dependent Clp protease ATP-binding subunit clpX
PfamA32U 67-249 -20.200 23  PF05496.12; RUVB_BACAN/21-179; Holliday junction DNA helicase RuvB P-loop domain
111-309 -32.300 15  PF07724.14; Q7PAG5_RICSI/595-759; AAA domain (Cdc48 subfamily)
315-384 -18.100 16  PF10431.9; Q118T1_TRIEI/770-850; C-terminal, D2-small domain, of ClpB protein
SCOP207 6-48 -10.300 41  d2ds5a_ g.39.1.11 (A:) automated matches {Escherichia coli [TaxId: 562]}
63-410 -97.400 52  d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
VFDB 2-415 -95.700 52  [O] COG1219 ATP-dependent protease Clp, ATPase subunit
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] (Range: 24-588) 565 COG1018 2-564 -41.200 12  [T] KOG1130 Predicted G-alpha GTPase interaction protein, contains GoLoco domain
CSGID 4-343 -32.800 IDP04095 hypothetical protein [Yersinia pestis CO92] YPO1987 [Yersinia pestis CO92]
4-564 -24.000 10  IDP02495 gene: pflA; paralyzed flagella protein PflA [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1565c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
H.sapiens 12-346 -36.600 13  sp|A2A3L6|TTC24_HUMAN Tetratricopeptide repeat protein 24 OS=Homo sapiens GN=TTC24 PE=2 SV=1
25-311 -47.800 13  sp|Q8TF17|S3TC2_HUMAN SH3 domain and tetratricopeptide repeats-containing protein 2 OS=Homo sapiens GN=SH3TC2 PE=1 SV=2 (Range: 901-1200)
HGM_OVER 375-565 -5.710 PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;
NEW_HUMAN_DOMAINS 72-198 -28.200 10  sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 (Range: 717-845)
143-258 -16.200 sp|Q8TF17|S3TC2_HUMAN SH3 domain and tetratricopeptide repeats-containing protein 2 OS=Homo sapiens GN=SH3TC2 PE=1 SV=2 (Range: 596-735)
PDB1018 1-555 -28.400 10  6af0_A mol:protein length:939 Ctr9 protein
4-330 -46.800 11  4i1a_A mol:protein length:391 Response regulator aspartate phosphatase I
21-315 -46.900 11  3q15_A mol:protein length:378 Response regulator aspartate phosphatase H
77-382 -30.700 1hz4_A mol:protein length:373 MALT REGULATORY PROTEIN
PfamA32U 11-330 -30.700 PF17874.1; W4QMK5_9BACI/433-753; MalT-like TPR region
86-323 -39.800 11  PF17139.4; R7EHD4_9BACE/12-276; Domain of unknown function (DUF5112 topsan)
157-497 -25.100 PF17826.1; G1SXV9_RABIT/101-469; Family of unknown function (DUF5588 topsan)
507-557 -9.760 13  PF00196.19; NARP_HAEIN/147-203; Bacterial regulatory proteins, luxR family
SCOP207 4-342 -27.700 12  d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase, OGT {Human (Homo sapiens) [TaxId: 9606]}
37-313 -38.600 10  d3txna1 a.118.8.9 (A:38-322) Proteasome regulatory subunit Rpn6, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
77-382 -30.500 d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
100-565 -10.100 d4jspa3 a.24.7.1 (A:1385-2001) mTOR FKBP12rapamycin-binding (FRB) domain {Human (Homo sapiens) [TaxId: 9606]}
506-564 -15.300 13  d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
VFDB 2-564 -41.200 12  [T] KOG1130 Predicted G-alpha GTPase interaction protein, contains GoLoco domain
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] (Range: 1-157) 157 COG1018 3-133 -8.590 [M] COG3056 Uncharacterized lipoprotein
CSGID 1-117 -7.550 IDP06159 hypothetical protein jhp0866 [Helicobacter pylori J99] NP_223584 [Helicobacter pylori J99]
H.sapiens 3-131 -7.490 13  sp|Q5T011|SZT2_HUMAN Protein SZT2 OS=Homo sapiens GN=SZT2 PE=2 SV=3 (Range: 301-600)
HGM_OVER 1-121 -5.000 PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]
NEW_HUMAN_DOMAINS 2-32 -6.770 sp|Q9P260|K1468_HUMAN LisH domain and HEAT repeat-containing protein KIAA1468 OS=Homo sapiens GN=KIAA1468 PE=1 SV=2 (Range: 255-403)
PDB1018 1-31 -8.340 2xtc_A mol:protein length:90 F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1X
PfamA32U 10-156 -48.300 10  PF14137.6; A6LYB2_CLOB8/32-184; Domain of unknown function (DUF4304 topsan)
SCOP207 7-132 -7.330 d1usub_ d.83.2.1 (B:) Activator of Hsp90 ATPase, Aha1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 3-133 -8.590 [M] COG3056 Uncharacterized lipoprotein
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] (Range: 1-207) 207 COG1018 153-206 -6.380 18  [S] COG0779 Uncharacterized protein conserved in bacteria
CSGID 146-206 -6.380 18  IDP91376 hypothetical protein VV1_1694 [Vibrio vulnificus CMCP6] VV1_1694 [Vibrio vulnificus CMCP6]
H.sapiens 36-189 -6.640 16  sp|Q9H761|CN139_HUMAN Uncharacterized protein C14orf139 OS=Homo sapiens GN=C14orf139 PE=2 SV=1
HGM_OVER 132-196 -3.480 12  PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;
NEW_HUMAN_DOMAINS 99-207 -6.750 20  sp|O00469|PLOD2_HUMAN Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 OS=Homo sapiens GN=PLOD2 PE=1 SV=2 (Range: 422-544)
PDB1018 23-204 -7.210 13  3u9l_A mol:protein length:324 3-oxoacyl-[acyl-carrier-protein] reductase
PfamA32U 89-177 -6.400 14  PF17039.5; B3MYJ1_DROAN/115-236; Fucosyltransferase, N-terminal
SCOP207 1-114 -6.850 12  d3l60a_ c.43.1.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 153-206 -6.380 18  [S] COG0779 Uncharacterized protein conserved in bacteria
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] (Range: 1-311) 311 COG1018 6-309 -44.700 18  [PT] COG3712 Fe2+-dicitrate sensor, membrane component
CSGID 116-282 -6.240 13  IDP95268 hypothetical protein A1S_0043 [Acinetobacter baumannii ATCC 17978] YP_001083140 [Acinetobacter baumannii ATCC 17978]
H.sapiens 105-263 -7.880 17  sp|Q5W0A0|F194B_HUMAN Protein FAM194B OS=Homo sapiens GN=FAM194B PE=2 SV=1 (Range: 301-600)
HGM_OVER 109-205 -4.680 14  PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)
NEW_HUMAN_DOMAINS 105-267 -6.050 17  sp|Q5W0A0|F194B_HUMAN Protein FAM194B OS=Homo sapiens GN=FAM194B PE=2 SV=1 (Range: 457-696)
PDB1018 89-311 -76.000 28  4m0h_A mol:protein length:232 Conserved hypothetical protein, putative anti-sigma factor
PfamA32U 100-196 -30.100 21  PF04773.13; Q2YA72_NITMU/40-132; FecR protein
240-308 -21.400 20  PF16344.5; A6LGL7_PARD8/234-304; Domain of unknown function (DUF4974 topsan)
SCOP207 107-290 -6.860 13  d2vu9a1 b.29.1.6 (A:875-1079) automated matches {Clostridium botulinum [TaxId: 36826]}
VFDB 6-309 -44.700 18  [PT] COG3712 Fe2+-dicitrate sensor, membrane component
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] (Range: 1-142) 142 COG1018 1-138 -75.100 34  [R] COG2166 SufE protein probably involved in Fe-S center assembly
CSGID 1-136 -74.300 30  IDP00875 gene: ynhA; cysteine desufuration protein SufE STM1374 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 2-140 -7.100 15  sp|O43747|AP1G1_HUMAN AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP1G1 PE=1 SV=5 (Range: 301-600)
HGM_OVER 42-141 -4.380 14  PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;
NEW_HUMAN_DOMAINS 71-130 -5.660 13  tr|Q8WVX6|Q8WVX6_HUMAN Uncharacterized protein OS=Homo sapiens GN=WAPAL PE=2 SV=1 (Range: 326-402)
PDB1018 1-138 -74.900 32  1mzg_A mol:protein length:146 SufE Protein
PfamA32U 11-131 -66.700 40  PF02657.15; J7QRG4_METSZ/8-134; Fe-S metabolism associated domain
SCOP207 1-136 -74.300 30  d3g0ma_ d.224.1.1 (A:) automated matches {Salmonella typhimurium [TaxId: 99287]}
VFDB 1-138 -75.100 34  [R] COG2166 SufE protein probably involved in Fe-S center assembly
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] (Range: 1-225) 225 COG1018 2-225 -85.700 25  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
CSGID 1-225 -94.900 28  IDP95294 response regulator protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] YP_494943 [Staphylococcus aureus subsp. aureus USA300_FPR3757]
H.sapiens 3-171 -29.400 10  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2 (Range: 1-300)
3-208 -21.500 10  sp|O60658|PDE8A_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8A OS=Homo sapiens GN=PDE8A PE=1 SV=2 (Range: 1-300)
HGM_OVER 7-207 -2.870 PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;
NEW_HUMAN_DOMAINS 1-126 -32.100 15  sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens GN=SOHLH2 PE=2 SV=2 (Range: 1-196)
PDB1018 1-225 -95.800 34  1kgs_A mol:protein length:225 DNA BINDING RESPONSE REGULATOR D
PfamA32U 2-222 -43.400 15  PF01993.18; F6D7B4_METPW/3-276; methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase
3-112 -51.900 30  PF00072.24; RSSB_ECOLI/10-121; Response regulator receiver domain
SCOP207 1-121 -62.500 38  d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
2-164 -55.800 17  d3rqia_ c.23.1.0 (A:) automated matches {Burkholderia pseudomallei [TaxId: 320372]}
118-225 -45.700 21  d1ys6a1 a.4.6.1 (A:128-233) Transcriptional regulatory protein PrrA {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 2-225 -85.700 25  [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] (Range: 1-388) 388 COG1018 2-384 -89.700 20  [H] COG1488 Nicotinic acid phosphoribosyltransferase
CSGID 2-388 -96.800 33  IDP90895 gene: pncB; nicotinate phosphoribosyltransferase [Yersinia pestis CO92] YPO1413 [Yersinia pestis CO92]
H.sapiens 2-384 -86.100 18  sp|Q6XQN6|PNCB_HUMAN Nicotinate phosphoribosyltransferase OS=Homo sapiens GN=NAPRT1 PE=1 SV=2
HGM_OVER 267-367 -3.090 16  HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;
NEW_HUMAN_DOMAINS 131-193 -4.790 sp|P78385|KRT83_HUMAN Keratin, type II cuticular Hb3 OS=Homo sapiens GN=KRT83 PE=1 SV=2 (Range: 1-85)
PDB1018 2-388 -116.000 47  2im5_A mol:protein length:394 Nicotinate phosphoribosyltransferase
PfamA32U 7-127 -51.200 22  PF17767.1; A0A075R4Y2_BRELA/59-193; Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
160-385 -77.100 40  PF04095.16; PNCB_NEIMB/171-398; Nicotinate phosphoribosyltransferase (NAPRTase) family
SCOP207 2-136 -65.500 44  d2im5a1 d.41.2.2 (A:3-137) Nicotinate phosphoribosyltransferase, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
137-387 -89.800 49  d2im5a2 c.1.17.2 (A:138-391) Nicotinate phosphoribosyltransferase, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
VFDB 2-384 -89.700 20  [H] COG1488 Nicotinic acid phosphoribosyltransferase
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] (Range: 1-245) 245 COG1018 2-244 -12.200 10  [M] COG3209 Rhs family protein
CSGID 2-244 -20.000 12  IDP05456 putative wall-associated protein [Bacillus anthracis str. Ames] BA_1094 [Bacillus anthracis str. Ames]
H.sapiens 3-244 -27.700 sp|Q6N022|TEN4_HUMAN Teneurin-4 OS=Homo sapiens GN=ODZ4 PE=2 SV=2 (Range: 1501-1800)
HGM_OVER 10-143 -9.770 10  PB023339 Q8A4U7_BACTN/1-171 PB023339; Pfam-B_23339;
NEW_HUMAN_DOMAINS 79-182 -6.750 sp|P18583|SON_HUMAN Protein SON OS=Homo sapiens GN=SON PE=1 SV=4 (Range: 606-751)
PDB1018 2-244 -27.600 10  2fkg_A mol:protein length:320 Outer Surface Protein A
PfamA32U 4-245 -19.900 10  PF06661.11; Q2K2F2_RHIEC/43-358; VirE3
SCOP207 1-244 -8.690 13  d3bwta_ a.118.1.0 (A:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
VFDB 2-244 -12.200 10  [M] COG3209 Rhs family protein
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] (Range: 1-599) 599 COG1018 1-346 -74.800 26  [H] COG2073 Cobalamin biosynthesis protein CbiG
357-599 -69.600 45  [H] COG2875 Precorrin-4 methylase
CSGID 1-346 -72.900 28  IDP93847 cobalamin biosynthesis protein CbiG [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001006909 [Yersinia enterocolitica subsp. enterocolitica 8081]
352-598 -65.700 44  IDP05539 gene: cbiF; precorrin-4 C(11)-methyltransferase [Clostridium difficile 630] CD3426 [Peptoclostridium difficile 630]
H.sapiens 354-584 -35.800 16  sp|Q9H2P9|DPH5_HUMAN Diphthine synthase OS=Homo sapiens GN=DPH5 PE=1 SV=2
HGM_OVER 1-172 -2.690 10  PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]
NEW_HUMAN_DOMAINS 352-442 -5.120 18  sp|Q5VW00|DC122_HUMAN DDB1- and CUL4-associated factor 12-like protein 2 OS=Homo sapiens GN=DCAF12L2 PE=2 SV=1 (Range: 359-463)
PDB1018 1-346 -67.100 20  3eeq_A mol:protein length:336 putative Cobalamin biosynthesis protein G homolog
350-598 -67.400 44  4e16_A mol:protein length:253 precorrin-4 C(11)-methyltransferase
PfamA32U 45-126 -47.200 50  PF11760.8; R6GY19_9FIRM/35-116; Cobalamin synthesis G N-terminal
132-213 -11.200 46  PF11761.8; R7JAV4_9BACT/120-216; Cobalamin biosynthesis central region
227-389 -43.200 25  PF01890.16; K9VGP0_9CYAN/96-268; Cobalamin synthesis G C-terminus
353-558 -52.300 26  PF00590.20; Q3A6A0_PELCD/39-272; Tetrapyrrole (Corrin/Porphyrin) Methylases
SCOP207 1-170 -57.400 23  d3eeqa2 c.152.1.1 (A:10-214) Cobalamin biosynthesis protein G, CbiG {Sulfolobus solfataricus [TaxId: 2287]}
219-346 -32.100 25  d2w6ka1 c.151.1.1 (A:1-139) Cobalamin biosynthesis protein CobE {Pseudomonas aeruginosa [TaxId: 287]}
353-580 -67.300 44  d1cbfa1 c.90.1.1 (A:21-251) Cobalt precorrin-4 methyltransferase CbiF {Bacillus megaterium [TaxId: 1404]}
VFDB 1-346 -74.800 26  [H] COG2073 Cobalamin biosynthesis protein CbiG
357-599 -69.600 45  [H] COG2875 Precorrin-4 methylase
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] (Range: 1-299) 299 COG1018 89-299 -28.900 10  [R] COG0790 FOG: TPR repeat, SEL1 subfamily
CSGID 120-299 -36.200 13  IDP90083 hypothetical protein CGSHiII_00664 [Haemophilus influenzae PittII] ZP_01795671 [Haemophilus influenzae PittII]
171-299 -36.900 17  IDP06196 hypothetical protein HP0336 [Helicobacter pylori 26695] NP_207134 [Helicobacter pylori 26695]
H.sapiens 30-299 -27.400 sp|P41002|CCNF_HUMAN Cyclin-F OS=Homo sapiens GN=CCNF PE=1 SV=2 (Range: 1-300)
89-299 -32.800 10  sp|Q96BR5|CA163_HUMAN Hcp beta-lactamase-like protein C1orf163 OS=Homo sapiens GN=C1orf163 PE=1 SV=2
122-299 -35.200 12  sp|Q5TEA6|SE1L2_HUMAN(removed signalp:1-23) Protein sel-1 homolog 2 OS=Homo sapiens GN=SEL1L2 PE=1 SV=2 (Range: 451-665)
199-299 -37.200 15  sp|Q9UBV2|SE1L1_HUMAN(removed signalp:1-21) Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3 (Range: 601-773)
HGM_OVER 54-280 -2.930 PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]
NEW_HUMAN_DOMAINS 223-290 -10.200 11  sp|Q14674|ESPL1_HUMAN Separin OS=Homo sapiens GN=ESPL1 PE=1 SV=3 (Range: 717-845)
PDB1018 120-296 -36.400 10  5b26_A mol:protein length:186 Protein sel-1 homolog 1
171-299 -36.900 17  1klx_A mol:protein length:138 Cysteine Rich Protein B
PfamA32U 215-299 -11.300 10  PF17139.4; R7EHD4_9BACE/12-276; Domain of unknown function (DUF5112 topsan)
242-277 -22.300 16  PF08238.12; Q74B15_GEOSL/119-154; Sel1 repeat
SCOP207 115-299 -33.000 14  d1ouva1 a.118.18.1 (A:28-290) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}
171-299 -38.100 17  d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}
VFDB 89-299 -28.900 10  [R] COG0790 FOG: TPR repeat, SEL1 subfamily
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] (Range: 1-361) 361 COG1018 50-355 -7.570 [KL] KOG2487 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4
CSGID 155-354 -6.830 12  IDP06453 gene: F4L; F4L [Monkeypox virus Zaire-96-I-16] NP_536480 [Monkeypox virus Zaire-96-I-16]
H.sapiens 123-351 -10.100 11  sp|Q7RTP6|MICA3_HUMAN Protein MICAL-3 OS=Homo sapiens GN=MICAL3 PE=1 SV=2 (Range: 601-900)
HGM_OVER 314-359 -4.790 15  PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;
NEW_HUMAN_DOMAINS 307-354 -7.130 17  sp|Q9H2P0|ADNP_HUMAN Activity-dependent neuroprotector homeobox protein OS=Homo sapiens GN=ADNP PE=1 SV=1 (Range: 446-529)
PDB1018 313-351 -9.350 15  2co8_A mol:protein length:82 NEDD9 interacting protein with calponin homology and LIM domains
PfamA32U 246-358 -7.670 18  PF15616.6; Q5NWS3_AROAE/221-349; TerY-C metal binding domain
SCOP207 310-354 -8.060 13  d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
VFDB 50-355 -7.570 [KL] KOG2487 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] (Range: 1-71) 71 COG1018 1-45 -5.080 13  [S] KOG4096 Uncharacterized conserved protein
CSGID 3-53 -5.650 IDP05644 gene: bclA2; exosporium glycoprotein [Clostridium difficile 630] CD3230 [Peptoclostridium difficile 630]
H.sapiens 18-71 -8.120 33  sp|Q96RD6|PANX2_HUMAN Pannexin-2 OS=Homo sapiens GN=PANX2 PE=1 SV=2 (Range: 301-600)
HGM_OVER 2-36 -4.360 17  HGC00857 gi|162620543|dbj|BAAW01002606.1|2.0 TMP01139;
NEW_HUMAN_DOMAINS 33-71 -5.490 20  tr|E9PQV5|E9PQV5_HUMAN Uncharacterized protein OS=Homo sapiens GN=CCDC37 PE=4 SV=1 (Range: 55-117)
PDB1018 4-56 -7.280 13  2w9p_A mol:protein length:87 MULTICYSTATIN
PfamA32U 4-55 -7.530 13  PF16845.5; B9HCU3_POPTR/31-111; Aspartic acid proteinase inhibitor
SCOP207 4-67 -6.080 10  d3l0ra1 d.17.1.0 (A:3-109) automated matches {Soft tick (Ornithodoros moubata) [TaxId: 6938]}
VFDB 1-45 -5.080 13  [S] KOG4096 Uncharacterized conserved protein
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] (Range: 1-221) 221 COG1018 14-204 -49.700 16  [R] KOG1665 AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats
CSGID 3-207 -51.400 11  IDP01014 gene: pipB2; secreted effector protein STM2780 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 19-216 -47.900 13  sp|Q7L273|KCTD9_HUMAN BTB/POZ domain-containing protein KCTD9 OS=Homo sapiens GN=KCTD9 PE=2 SV=1
HGM_OVER 57-221 -1.880 PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;
NEW_HUMAN_DOMAINS 59-182 -10.800 sp|Q6NSW7|NANP8_HUMAN Putative homeobox protein NANOGP8 OS=Homo sapiens GN=NANOGP8 PE=5 SV=1 (Range: 177-305)
PDB1018 3-218 -73.300 24  2w7z_A mol:protein length:214 PENTAPEPTIDE REPEAT FAMILY PROTEIN
PfamA32U 38-210 -11.900 PF12541.8; R6DEH5_9CLOT/2-276; Protein of unknown function (DUF3737 topsan)
101-181 -33.500 59  PF13599.6; D6D2K3_9BACE/86-166; Pentapeptide repeats (9 copies)
SCOP207 3-215 -12.200 12  d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
40-219 -63.100 21  d2bm5a_ b.80.8.1 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}
VFDB 14-204 -49.700 16  [R] KOG1665 AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.