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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 2171< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 gi|77358701|ref|YP_338286.1| pilS cassette (NMB0021) [Neisseria meningitidis MC58] 124 COG1018 1-122 -28.600 72  [NU] COG4969 Tfp pilus assembly protein, major pilin PilA
22 gi|77358702|ref|YP_338287.1| pilS cassette (NMB0022) [Neisseria meningitidis MC58] 112 COG1018 1-106 -25.200 56  [NU] COG4969 Tfp pilus assembly protein, major pilin PilA
23 gi|77358703|ref|YP_338288.1| pilS cassette (NMB0023) [Neisseria meningitidis MC58] 135 COG1018 1-122 -28.000 73  [NU] COG4969 Tfp pilus assembly protein, major pilin PilA
24 gi|77358704|ref|YP_338289.1| pilS cassette (NMB0024) [Neisseria meningitidis MC58] 198 COG1018 1-108 -24.800 72  [NU] COG4969 Tfp pilus assembly protein, major pilin PilA
25 gi|77358705|ref|YP_338290.1| large pilS cassette (NMB0025) [Neisseria meningitidis MC58] 225 COG1018 82-223 -32.700 54  [NU] COG4969 Tfp pilus assembly protein, major pilin PilA
26 gi|15677981|ref|NP_273092.1| pilS cassette (NMB0026) [Neisseria meningitidis MC58] 115 COG1018 1-72 -8.760 79  [NU] COG4969 Tfp pilus assembly protein, major pilin PilA
27 gi|15675967|ref|NP_273093.1| peptidyl-prolyl cis-trans isomerase (NMB0027) [Neisseria meningitidis MC58] 109 COG1018 4-109 -64.600 44  [O] KOG0549 FKBP-type peptidyl-prolyl cis-trans isomerase
28 gi|15675968|ref|NP_273094.1|(removed signalp:1-17) hypothetical protein (NMB0028) [Neisseria meningitidis MC58] 55 COG1018 1-45 -31.200 44  [S] COG3205 Predicted membrane protein
29 gi|15675969|ref|NP_273095.1| glycerate dehydrogenase (NMB0029) [Neisseria meningitidis MC58] 317 COG1018 1-317 -84.600 30  [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases
30 gi|15675970|ref|NP_273096.1| methionyl-tRNA synthetase (NMB0030) [Neisseria meningitidis MC58] 685 COG1018 2-611 -178.000 24  [J] KOG1247 Methionyl-tRNA synthetase
442-685 -53.100 14  [J] KOG2241 tRNA-binding protein
31 gi|15675971|ref|NP_273097.1| D-fructose-6-phosphate amidotransferase (NMB0031) [Neisseria meningitidis MC58] 612 COG1018 1-612 -178.000 52  [M] COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains
32 gi|15675972|ref|NP_273098.1| hypothetical protein (NMB0032) [Neisseria meningitidis MC58] 175 COG1018 1-129 -11.200 13  [M] COG2980 Rare lipoprotein B
1-175 -10.300 [M] COG3017 Outer membrane lipoprotein involved in outer membrane biogenesis
33 gi|15675973|ref|NP_273099.1|(removed signalp:1-19) putative membrane-bound lytic murein transglycosylase A (NMB0033) [Neisseria meningitidis MC58] 422 COG1018 26-414 -86.500 24  [M] COG2821 Membrane-bound lytic murein transglycosylase
34 gi|15675974|ref|NP_273100.1| hypothetical protein (NMB0034) [Neisseria meningitidis MC58] 279 COG1018 1-274 -58.100 24  [P] COG0672 High-affinity Fe2+/Pb2+ permease
35 gi|15675975|ref|NP_273101.1|(removed signalp:1-19) hypothetical protein (NMB0035) [Neisseria meningitidis MC58] 369 COG1018 9-369 -93.500 62  [P] COG2822 Predicted periplasmic lipoprotein involved in iron transport
36 gi|15675976|ref|NP_273102.1|(removed signalp:1-20) hypothetical protein (NMB0036) [Neisseria meningitidis MC58] 401 COG1018 1-401 -97.100 50  [P] COG2837 Predicted iron-dependent peroxidase
37 gi|15675977|ref|NP_273103.1| phnA protein (NMB0037) [Neisseria meningitidis MC58] 109 COG1018 2-109 -63.800 61  [P] COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism
38 gi|15675978|ref|NP_273104.1| UDP-N-acetylglucosamine pyrophosphorylase (NMB0038) [Neisseria meningitidis MC58] 456 COG1018 1-456 -137.000 94  [M] COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains)
39 gi|15675979|ref|NP_273105.1|(removed signalp:1-21) hypothetical protein (NMB0039) [Neisseria meningitidis MC58] 69 COG1018 5-50 -5.890 26  [D] COG0772 Bacterial cell division membrane protein
40 gi|15675980|ref|NP_273106.1| putative hydrolase (NMB0040) [Neisseria meningitidis MC58] 237 COG1018 3-226 -67.800 25  [R] KOG3109 Haloacid dehalogenase-like hydrolase


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Rychlewski L, Zhang B, Godzik A. Fold predictions for bacterial genomes. J Struct Biol. 2001 May-Jun;134(2-3):219-31. Review.