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Query: PF00083.17; STP1_ARATH/26-489; Sugar (and other) transporter (submitted on 2011.Jan.03, from 10.1.46.41, by public)

Results of FFAS03 search in SCOP175
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQHEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTIGFTTDASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKGIPIEEMGQVWLast
1 -25.200d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors   13  55..................................................GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL--FLLGMAWFNDWHAALYMPAFCAILVAL-FAMMRDTPQ----------------SCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAAIVGYTVDFFGWDGFMVMIGGSILAVILLIVVMIGEK........... 435
2 -18.300d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors   12  35..............................................HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL---FFAKTDAPS-------------------------SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA----------------TSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL-NMYESIGFQAYLVLGLVALGFTLISVFTLSGPGPLSLLR..... 410
3 -6.290d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors   14  1.................................................................................................GSSGSSGQAELMTLTIVKGAQGFGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQ................................................................................................................................................................................................................................................................................................................ 63
4 -5.530d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors   13  3....................................................................................................................LTSFSMEDDPQPVLLDSISVKPNTI--LLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLEEPKLEAAELLVDRF---PLPRFIDTEAGGSQARFLLSKLNPSDNYQDMARGGSTIVLTDDVSLQNFMTHLQQ................................................................................................................................................................................................................... 135
5 -5.340d1nsla_ d.108.1.1 (A:) Probable acetyltransferase YdaF {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors   14  1................................................................................................................................................................................................GMFTCKVNEHITIRLLEPKDAERLAELIIQNQQRLGKWLFFAENPSSADTYRETIIPDWRRQYADLNGIEAGLLYDGSLCGM-EIGYWIAKEFEGKGIITAARKLITYAFEELELVGNEKSRAVPERIGRDGLYVNGMHHDLVYYSLLK........................................................................................................................... 177
6 -5.180d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors   11  3....................................................................................................................................................................................................LPESPKYLARKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEM...................................................................................................................................................................................................................... 70
7 -5.000d2fcka1 d.108.1.1 (A:1-178) Putative ribosomal-protein-serine acetyltransferase VC1889 {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors   13  8......................................................................................................................................................................................................VTQRLQLRLITADEAEELVQCIRQSQTLHQEAEQFIQATRLNWVKAEAYGFGVFERQTQTLVGMVAINEFYHTFNMASLGYWIGDRYQRQGYGKEATALILFCFERLELPENVPSQALALRCGPNRFLYAGEPKAGIVFSLI............................................................................................................................ 177
8 -4.880d5ruba2 d.58.9.1 (A:2-137) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}  ali model 3D-neighbors   11...........................................................................................................................................................................................................LKEEDLIAGGEHVLCAYIMKPKAGYGYVATAAHFAAESST-GTNVEVCTTDDFTRGVDALVYEVDEARELTKIAYPVALFDRNITDGKAMIASFLTLTMGNNQGMGDVEYAKMHD.................................................................................................................................................. 124
9 -4.560d1ztpa1 d.86.1.2 (A:17-250) Basophilic leukemia expressed protein BLES03 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors   10  31.............................................................................................................................ATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAVYGQGYDVQGLQAAWEALQTSGRPITPGTLRQLAITHHVLSGKWLMHLAPGFKLDHAWAGIARA-VVEGRLQVAKVSPRAKEGGRQVI--VYTDDFTDRLGVLEADSAIRAA-GIKCLLTYKPDVYTYLGIYRANRLCPTLYESRFQLGGSARGSRVLDRANNVEL........................................................................................................................................... 234
10 -4.560d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}  ali model 3D-neighbors   13  21.............................................................PVFYKEQAVGYVTSAAYGYTVAKPIAYSYLPGTVSVGDSVDI-------------YFGRRITATVTEDPLYDPK---TRLRG................................................................................................................................................................................................................................................................................................................................. 88

FFAS is supported by the NIH grant R01-GM087218-01
1 2 4 5 2 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Godzik A. NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1. Trends Biochem Sci. 2004 Mar;29(3):106-10.