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Query: gi|30260198|ref|NP_842575.1| hypothetical protein (BA_0003) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70
# Score Template Links and tools%idFirst MKRIKISTEYITLGQFLKLADVIDTGGAVKWFLQEYEVYVNQELENRRGRKLYANDIIEIPGSGSFQVQSLast
1 -23.300IDP91404 ribosome-associated heat shock protein implicated in the recycling of the 50S subunit [Vibrio vulnificus CMCP6] VV1_0879 [Vibrio vulnificus CMCP6]  ali follow..  12  1...MSSPNEAVRLDKWLWAARFYKTRSIARDMVDGGKVHYNGQRA-KPSKIVEVGAVLKLR......... 57
2 -22.900IDP01031 gene: yrfH; ribosome-associated heat shock protein Hsp15 STM3497 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  5......SSVEVRLDKWLWAARFYKTRAMAREMIEGGKVHYNGQRS-KPSKIVELNATLTLR......... 58
3 -19.500IDP91360 16S rRNA uridine-516 pseudouridylate synthase [Vibrio vulnificus CMCP6] VV1_2843 [Vibrio vulnificus CMCP6]  ali follow..  24  1..........MRLDKFLCDALGA-TRKEATKILKSGEVTVNEQVQKSGAVKVTEECVVEWQGREL..... 54
4 -19.500IDP90550 gene: rpsD; 30S ribosomal protein S4 [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1594 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  16  99...........RLDNIVYRMGFATTRRFARQLVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKS...... 151
5 -15.800IDP00061 hemolysin A BA_4399 [Bacillus anthracis str. Ames]  ali follow..  20  1.....MSAKKERVDVLLVERGLIETREKAKRAIMAGLVYANEMRLDKPGEKIPQDTEITVKGQVMPYV.. 63
6 -15.500IDP06051 gene: hlyA; hemolysin [Helicobacter pylori J99] NP_223058 [Helicobacter pylori J99]  ali follow..  16  1..........MRLDYALFNQHLANSREKAKALVLKKQVLVNKMVVSKPSFIVKEGDQIELIAPNLFVSRA 60
7 -15.400IDP04727 hemolysin A [Clostridium perfringens ATCC 13124] CPF_2072 [Clostridium perfringens ATCC 13124]  ali follow..  14  5......KEKKERLDVLLVEQGIAESREKAKRYIMAGMVFIGEKRVDKAGEKVPVSSNIIFRGEKLPFVS. 67
8 -14.600IDP05733 putative RNA methyltransferase [Clostridium difficile 630] CD1208 [Peptoclostridium difficile 630]  ali follow..  15  4...........RIDLLLVEQGYFESRERAKKAIMAGLVFVDNQRCDKAGTEVKEDCSIEVKGNPIPYVS. 61
9 -14.200IDP91456 16S rRNA uridine-516 pseudouridylate synthase [Vibrio vulnificus CMCP6] VV1_0246 [Vibrio vulnificus CMCP6]  ali follow..  12  3......QDNAKRLNKYISETGFC-SRREADKLIEQGRVTINGKQ-PEMGTKVLPGDDVCVDGKPV..... 59
10 -12.500IDP06158 hypothetical protein jhp0682 [Helicobacter pylori J99] NP_223400 [Helicobacter pylori J99]  ali follow..  19  4..VFIAPTHYKRIDEFLAKE-LQISKNQVLNLIKEGLVFCQKKEVKKGGLALKEGDAITL.......... 60
11 -12.400IDP91436 gene: rluD; 23S rRNA pseudouridine synthase D [Vibrio vulnificus CMCP6] VV1_0484 [Vibrio vulnificus CMCP6]  ali follow..  17  10..TVKDSQLGQRLDQAIAELFADFSRSRLKEWLLDGKVTVDGNVVTKPRTKVMGGEVITV.......... 67
12 -11.700IDP05338 gene: tyrS; tyrosyl-tRNA synthetase [Listeria monocytogenes EGD-e] lmo1598 [Listeria monocytogenes EGD-e]  ali follow..  15  342VPTFVAEDSEANLVDWLVTLGIEPSKRQAREDVGNGAIYINGERQQDLEKIMDASDRIE........... 400
13 -11.600IDP06293 tyrosyl-tRNA synthetase [Streptococcus pneumoniae TIGR4] NP_346519 [Streptococcus pneumoniae TIGR4]  ali follow..  17  349.......DENNNIVELLVSSGIVNSKRQAREDVQNGAIYVNGDRIQELDYVLSDADKLE........... 400
14 -11.400IDP90605 gene: tyrS; tyrosyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1271c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  17  336.......QGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMYLEQGEYILQIGKR...... 392
15 -11.000IDP05300 tyrosyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str. N16961] VC_0631 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  331.......ESGIAISNLLKEAGLVASTSDALRMIKQGAVKLDGEKLEDAKLIPACGTSVYQVGKR...... 387
16 -10.700IDP05144 tyrosyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS4556 [Bacillus anthracis str. Sterne]  ali follow..  16  342VPSVERTAEDTVLIDLLVESKISPSKRQAREDVTNGAIYVNGERTQALDYVVTEKDRIE........... 400
17 -10.700IDP04622 tyrosyl-tRNA synthetase [Bacillus anthracis str. Sterne] BAS4556 [Bacillus anthracis str. Sterne]  ali follow..  16  342VPSVERTAEDTVLIDLLVESKISPSKRQAREDVTNGAIYVNGERTQALDYVVTEKDRIE........... 400
18 -10.700IDP06187 hypothetical protein jhp0890 [Helicobacter pylori J99] NP_223608 [Helicobacter pylori J99]  ali follow..  10  3...........KAYKLLSVQ----SHKKAKALIDSGLVSIGGQKLMVARKELPQNTRFSVQKVEKPSV.. 58
19 -9.700IDP04648 gene: rluD; ribosomal large subunit pseudouridine synthase D [Francisella tularensis subsp. tularensis SCHU S4] FTT1245 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  10  15..IMHPKDAGKRIDVAINEQFEQFSRAQIQKWLKEGSITVNGRAT-KPKHIVLGDEEVEIN......... 72

FFAS is supported by the NIH grant R01-GM087218-01
1 2 4 1 8 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.