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Query: gi|30260199|ref|NP_842576.1| recombination protein F (BA_0004) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRALast
1 -18.400sp|Q8IY18|SMC5_HUMAN Structural maintenance of chromosomes protein 5 OS=Homo sapiens GN=SMC5 PE=1 SV=2 (Range: 1-300)  ali follow..  17  53..IVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKP-RADKVGFFVKRGCSRGMVEIELFRASGNLVITIDVAKNQSFWFINKKSTTQVEEKVAALNIQVFLPQD-----------GEFAKLSKIELLEATEKSIG--PPEMHKYHCELKNLREKEKQLETSCKEKTEYLQKMVQRNERYKQDV................................................................................................................................................................................ 250
2 -17.400sp|Q92878|RAD50_HUMAN DNA repair protein RAD50 OS=Homo sapiens GN=RAD50 PE=1 SV=1 (Range: 1-300)  ali follow..  14  2SRIEKMSILGVRSFDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAAQIRLQFRDVNGELIASMVCTQKSKKTEFKTLE-REMISSLGV-NVIFCHQEDSNWPLSEGKALKQKFDEIF---------SATRYIKALETLRQVRQTQGQKVKEYQMELKYLKQYKEKACEI-ITSKEAQLTSSKEIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALDSRKKQMEKDNSE......................................................................................................................... 288
3 -15.800sp|Q9NTJ3|SMC4_HUMAN Structural maintenance of chromosomes protein 4 OS=Homo sapiens GN=SMC4 PE=1 SV=2 (Range: 1-300)  ali follow..  11  82LMITHIVNQNFKSYAGEKIPFHKRFSCIIGPNGSGKSNVIDSMLFV-RAQKIRSKKLSVLIHNSDQSCTVEVHFQKIIDKEGDDYEVRDNTSVYHISGKKK-TFKDVGNLLRFLILQGEVEQIAMMKPKGQTEHDEGMLEYLED--IIGCGRLNEPIKVLCRRVEILNEHRGEKLNRVKMVEKEKDAL........................................................................................................................................................................................... 298
4 -15.500sp|Q8NDV3|SMC1B_HUMAN Structural maintenance of chromosomes protein 1B OS=Homo sapiens GN=SMC1B PE=1 SV=2 (Range: 1-300)  ali follow..  15  3.HLELLLVENFKSWRRQVIGPFRRFTCIIGPNGSGKSNVMDALSFV-KIANLRVKNIQELIHGAHSSASVKIIYVEESGEEKTFARIIRGGCSEFRFNDNLVSRSVYIAELNCLVFQGTVESISVKKPKERTQFFEEISGELIGEYEEKKRKLQKAEEDAQFNIAAERRQAKLEKEEAERYQSLLEELKMNKIQLQLFQLYHNEKKIHLLNTKLEHVNRDLSVKRESLSHHENIVKARKKEHGMLTRQLQQTEKELKSVETLLNQKRPQY......................................................................................................... 298
5 -14.900sp|Q9UQE7|SMC3_HUMAN Structural maintenance of chromosomes protein 3 OS=Homo sapiens GN=SMC3 PE=1 SV=2 (Range: 1-300)  ali follow..  15  1MYIKQVIIQGFRSYRDQTIPFSSKHNVIVGRNGSGKSNFFYAIQFVDEFSHLRPEQRLALLHEGTGPRVISAFVE-DKEEVSLRRVIGAKKDQYFLDKKMV-TKNDVMNLLESAGFSRSN-QMATAPDSQRLKLLREVAG---------TRVYDERKEESISLMKETEGKREKINELLKYIEERLHTLEEEKEELAQ-------------YQKWDKMRRALEYTIYNQELNETRAKLDELSAKRETSGEKSRQLR........................................................................................................................ 257
6 -14.800sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosomes protein 1A OS=Homo sapiens GN=SMC1A PE=1 SV=2 (Range: 1-300)  ali follow..  17  2GFLKLIEIENFKSYKRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVEKTSNLRVKTLRDLIHGAPNRAFVSMVYSEEGAEDRT--VIVGGSSEYKINNKVV-QLHEYSEELNFLVFQGAVESIAMKNPKERTALFEEISGELAQEYDKRKKEMVKAEEDTQFNIAAERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQY......................................................................................................... 298
7 -14.800sp|Q96SB8|SMC6_HUMAN Structural maintenance of chromosomes protein 6 OS=Homo sapiens GN=SMC6 PE=1 SV=2 (Range: 1-300)  ali follow..  16  48..IESIHLKNFMCHSMLPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGRA-RGSSLKGFVKDGQNSADISITLRNRGDDNSILIQSIDGSRSYKLKSATGSVVSTRKEELIAILVLTQEMSLQSKNEGDKYKFFMKAMKEDYSYIMETKERTKEQIHQGEERLTELKRQCVEKEERFQSIAG................................................................................................................................................................................................ 263
8 -14.300sp|O95347|SMC2_HUMAN Structural maintenance of chromosomes protein 2 OS=Homo sapiens GN=SMC2 PE=1 SV=2 (Range: 1-300)  ali follow..  15  1MHIKSIILEGFKSYAQRTEGFDPLFNAITGLNGSGKSNILDSICFLSNLSQVRASNLQDLVYKNGQAGITKASVSEVHDEITVTRQVVIGGRNKYLINGVNANNTRVQDLFCSVGLNVNN-KVLNMKPPEILSMIEEAAG---------TRMYEY---KKIAAQKTIEKKEAKLKEIKTILEEEITPTIQKLKEERSSYLE.............................................................................................................................................................................. 219
9 -11.800sp|Q9UQE7|SMC3_HUMAN Structural maintenance of chromosomes protein 3 OS=Homo sapiens GN=SMC3 PE=1 SV=2 (Range: 901-1200)  ali follow..  16  72......................................................................................................................................CNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMEL----MNVLELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVG----RVSFTGKQGEMREMQSGGQKSLVALALIFAIQKC-----DPAPFYLFDEIDQALDAQHRKAVSDMIMEHAQFITTTFRPELLE........................ 281
10 -11.500sp|Q92878|RAD50_HUMAN DNA repair protein RAD50 OS=Homo sapiens GN=RAD50 PE=1 SV=1 (Range: 1051-1312)  ali follow..  14  19......................................................................................................................RNHNLALGRQKGYEEEIIHFKKELREP------QFRDAEEKYREMMIVMRTTELVNKDL----DIYYKTLDQAIMKFHSMKMEEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTA----------------------LDMRGRCSAGQKVLASLIIRLALAETF---CLNCGIIALDEPTTNLDRENIESLAHALVENFQLLVITHDEDFVE........................ 225
11 -9.880sp|Q8IY18|SMC5_HUMAN Structural maintenance of chromosomes protein 5 OS=Homo sapiens GN=SMC5 PE=1 SV=2 (Range: 901-1101)  ali follow..  15  4..............................................................................................................................................................................TEELKGKKVELDQYRENISQVKERWLNPLKELVEKINEKFSNFFSSMQCAGEVDLHTENEEDYDKYGIRIRVKFRSSTQLHELTPHHQSG---------------------GERSVSTMLYLMALQELNRC-----PFRVVDEINQGMDPINERRVFEMVVNTACFFITPKLLQNLP--YSEKMTVLFVYNGPHMLE.... 179
12 -9.300sp|Q9UQE7|SMC3_HUMAN Structural maintenance of chromosomes protein 3 OS=Homo sapiens GN=SMC3 PE=1 SV=2 (Range: 1051-1217)  ali follow..  25  66...........................................................................................................................................................................................................................................................................................SGGQKSLVALALIFAIQKC-----DPAPFYLFDEIDQALDAQHRKAVSDMIMEHAQFITTTFRPELLE........................ 131

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 7 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Topczewski J, Godzik A., Paszewski A. The Aspergillus nidulans cysA gene encodes a novel type of serine O-acetyltransferase which is homologous to homoserine O-acetyltransferases. Microbiology. 2000 Oct;146 ( Pt 10):2695-703.