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Query: gi|30260197|ref|NP_842574.1| DNA polymerase III subunit beta (BA_0002) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRFSIQKDYLVRSVQDVMKAVSFRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVEEDGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISVENHLMTKITSGKSEFNLNGLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELTCIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLSTLEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEIKISFTGAMRPFLIRTVNDESIIQLILPVRTYLast
1 -4.400PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  10  45......SQVAYPNTIIAGVDVSFSNASSAATKVNSAWKHYKLTVTGDDFSWTY--------------QPESNEPIVDGEAAAKEIISHNEAFVWPVRLVESLSGKTKTTATSNEVDLDQDVD-------LSMLSDTFDQKKFEKDLGAAIDEFNEGRSGTFEANSSYDEQAGKFTVEARSNEKLNREHVYAELELASLAETVDLSKLGNDAYEPLNGTLTDDQIQAACNAANNFLGVNVTLKAGKVDGS--SVLQWISFADPANPTLDTSQISSWAAELA--GFNTVGSTRWWTRADGKQCAVEGGD---------------FGWSIDSSSLAKQVEDAINNKQTGEIEIKYSQK........................ 362
2 -2.700PB009510 _JGI.0345302_ 2004041369 [Human Gut Community Subject 8]  ali follow..  18.......KWMFQVMGLEYDKALKLAE-ELPEQFFPETATWGLCWHEIKWGLPVQENLSYQ-ERRQAIYEKRDYHSPMTPYIMERYLENATGFTVHIADCHDAGPLKYKPPHPNVF------------KAFFNGDGTLDSKKVRKLIDKL---------KESHTTYFVNDYSMFEIVFSWDGSHLMDAAIEYEMRLGVKYKEGEFRIAETLDIERMTARAKVPLSEKMHIEKQTVSAKAFNWQSLFFDGSV------------------------------PMDGNLLMNYCRADNKTTANIKIPVASISESYGNATCTVKR---------FDGSLKMNGSRLLNSL................................. 325
3 -2.060PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  12  77....................LKITIDENLFPLLSIKSNNGRLAIRIQDGTRIKPTQYVIEGSSKTLKYLKTSGPMDFEAQ------NAFSEDQLEIKISGSSDVKFPSGSGDLVFADLDCKNLTSKVSGSGDITLKGKADEARYSV......................................................................................................................................................................................................................................... 208
4 -1.630PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;  ali follow..  10..................................................................................................................................................................................................................................................................GLGIAVCLFSATNSIAQVKTHSSL---------RAENLEVILVKDIQHISDTTHHTHAHDPHKSSYKILHVNFMLV---SDPSVTGYKSVMMRLIDPHGVDIYDPAAGGGLF......... 110
5 -1.460PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  26...........LRLEILSPGWWNNEEGPDFKHAEFFLEGKGLIRGSVEIHVAVCLHVVMWNDLKGRCVKNFSGK-VIPQITLSLYLEEIIETIDVGSYIGNKQVIPGYCNLEMRKQKITQQWIGGFLDYAGDERILQKAKKYEKWIENKPFERVLYEA--IMESLGYKNNKKPFLMLAS--QSFVPEYTPAQEKKIIAQSLLLGMAGLLPLNEEETKRFDDETIQYFDRIFSTWQGIKPKIHQTPLTRESWSYTGIRPANFPDRRIVAIANILSEHLDNGLFRY-------IFQKRDDTKKNTRGFKSFVNEFLSPFLETHDAYWSYRYTPGGKKLNKPQKLLGKERTSNIFVNVIIPVML.................. 394
6 -1.450HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;  ali follow..  78...............................................................................................................................NFEFGRPVMFFKAGETKTAQTDGKTEKKMLKYFSFTGTVSYVDGDRMVITVPDSAPLLELQQADVPVGVQLSFDETSYKMMFDALDRTMKAKNNRLA---------------YLRDLFYSHRKAERYSFEPMRFP..................................................................................................................... 197
7 -1.360PB022506 Q11RP6_CYTH3/1-298 PB022506; Pfam-B_22506;  ali follow..  14.......................................................................................SIKDSRFETEHLAKYHLSFQVNFELFRICIVDGDSNRCLFLEDYTLADIYTTNDLLEQLDI-LFEDHILIKAGFWKSITVGFKNTQFSLIPEA----------------------LFEKDYLKEYLTLNEPDEEYHFYKQRQTEAVNVFATNQRLTSWFNKTYPLKQVRYVHHTASMIEGIMLQKDKNAAEKSVFIQ--EQYFLTIIVKQGKKLIF-CNSFTFNTSEDFV-----------------FILFVFDQLNPEKCPVVVFGEIT...................... 249
8 -1.280PB019827 gi|67919427|ref|ZP_00513005.1| conserved hypothetical protein [Chlorobium limicola DSM 245]gi|67782966|gb|EAM42367.1| conserved hypothetical protein [Chlorobium limicola DSM 245]  ali follow..  2.........................SVSWIAGAEYQLFKKNLLLAVRDYAEGYYSPFAGAFAERGDGGSNERGVYL----------------GIDAALSSKVSVGAYYDWFRFPKLDSKDYPYPS-SGYDTRFFLDWKQSRAVTWTLQLQHKEKEVALKQCPDGAGSCDEEEELYAPLGDRVRLDCDIDALRKLTLRTRGEVKRVVKEYLAGDESCYGWLVYQQAGYKAGKFGLKGRFTIFNTDDYDASIYVYEDDLPLVFNSTGFNGRGK------AFFILGTWDVTKNLKLAG--KFETTWYDDREVYGDSTDQRNTSA---GTFHFG................................................. 283
9 -1.050PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  12  59.......NDWPEFLQRIIKAGSSPIQHDIMLLGALTALGACM-----SRHVRCLYGGKYHHPSLQCFVVAPSASGKGILSYIRLLVEPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERTKKEAPQMPPNRMF---NNTGTGILQNIMDSTGLICEAEADTLSTAIGSDHGHSDTLRKAFDHDRLSYNRRTDQEYREVKKSYLVLISGTPSQVQTFIPTAED-------------------SYSRQLYYYMCGISKWISQFMDNEIDWEETAMGLEWKEKLSVIKTHGIHTLQLTDEQKEEITVFSDLFERSSVANGREMYSFVARLAVNLCRIMSEVAVLRALESPQ................................ 383
10 -1.000PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  48..........................................................................................................................................................................................KDAVMGEEAFNNAMQAITNRSFVLEANSVQPLNGRVYYVNSNTNFVSLNDGQAMVQI--VQGSASNVQVKQENNGNVYLSMSVQGIFISATVNLVLYSGTNNAMVTVPNFSGNNLTMN------GTLLPYSDSNVFQGT...................................................... 195

FFAS is supported by the NIH grant R01-GM087218-01
1 2 8 9 7 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Database searching by flexible protein structure alignment. Protein Sci. 2004 Jul;13(7):1841-50.