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Query: gi|30260199|ref|NP_842576.1| recombination protein F (BA_0004) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRALast
1 -2.730HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  16  13.......................GLTFVIGFFVAG---VIKLIASAADSLAFYSSHQEELARLKR---KLHQKVATLITESALSDEEYGSDGREDFSRGVTKHPGDNRGFYHGVSPGESERGLM--------------------DYFYPEDTRTMFLRKEEQMLQHDKKNNKTSST....................................................................................................................................................................................................... 141
2 -2.710PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  71............................................................................................................................................TAADTVRNNANEYNALLNGDAADAAAVKAEQVKDSKTVESLGKELKASAPEYEGCVAENAQGLDAAAVKLNEQADWYETHEK-SLSKAVRAVVESKAAKRLDDAKTNLTAKLDEASKLLADSDGKVADN.......................................................................................................... 198
3 -2.630PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  10  31.........................................................................................................................................................................................................................................EKAKKEREQAVIARLIDIRKAQQEYRSLHHGMYTDTLIDFVKNQKLPFVMKVGQLTDDQLESGLTEKKAMAIINKAKKTGKYDEV-KKNGLENFKRDTMWVAVMDTIYPKGFNADSMKYIPYGNGAIFEMNVKNDTAKSG.. 172
4 -1.620PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  11  113..........................FVVAPSASGKGILSYIRLLVPIHDEIRKEVTIQMKAYKKEKAEYDAMISGNNTGTGILQNIMDSDGTGLICEAEADTLSTAIGSTLRKAFDHDRLSYNRRTDQEKKSYLSVLISGTPSQVQTFIPTAEDGSYSR--QLYYYMCGISKWISQFMDNEIDWEEIFTAMGLEWKEKLSVIKTHGIHTLQ-LTDEQKEEIDTVFSDLFERSSVANGREMYSFVARLSPQPYDFKTSPTSPFTPDKEIPTDNRKDDIITRWDVSISQEDFHAVLSLAEPLY------CHATHILSFLPNTEISHRPNADRDYLFQKLGDEFTRTQLLEEAVAMGIKENTALTKHGKLISMDGKG 507
5 -1.580PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  12  1....................................................................................................................................................................................................................................................MTLLGDKTASPYDTGTPVPGPGGMAVTYEQVATGGLPVAGLERPVVPRLSAGLKLHGEYQGSGFTEPKYIARRVASSVDGSRDETIAHRVSGRFGREVSADNVRYLIEQKLDPLGVTVPEGREEEDISAPR 146
6 -1.480HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574;  ali follow..  11  2............................................................................................................................................................................................................................................................DEAVAMAQDAIGLMLEDCEVCPKPSLPSAIHVDTGDFIAMIPFDMEEYQKQFKPVKKTLSI-LNDAAESAHINFSSVLQKGLKSELGMI.................................. 92
7 -1.440PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;  ali follow..  135..........................................................................................................................................................................................................................................................................................................................LEEEYLDIEEEVTALVASYVDDHLELFAKIV.............................. 165
8 -1.440PB009510 _JGI.0345302_ 2004041369 [Human Gut Community Subject 8]  ali follow..  2.........................................................................................................................................MLSYVTPGFYDKSYVGKWMFQVMGLEYDKALKL-ETATWGLCWHEIKWVQENLSYQERRQAIYEKRDYIMERYLENATGFTVHIANVFKAFFNGDGTLDSKKVRKLIDKLKESHTTYFVNDYSMF................................................................................................................. 160
9 -1.170PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  1..................................................................................................................................................MKAIRHFITITHHKILVMQGCFR--------IGLYKQGLLHDMSKYSPTEFLVGCRYYKGYMS-----PNNAERADRGYSSAWLHHKGRNKHHLEYWIDYAVSKPGDDKTHTKMEGMKMPIRYVCEMFIDRVSASKNYQKEKYTDKSALEYYEKSVDHYMIHPDTKAMLEYLLVMLSVKGEEYTYSYIKK....................................... 177
10 -1.130PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  10  2...................................KKTIFYSLFSALFMLTSCSMFEID--NYEEPSETIWGEVVDEATGKRVLTDQGSEGIRVRLVQHNPDFYCMMDGTFQNTKIFKGEYNVRIDGP....................................................................................................................................................................................................................................................... 100

FFAS is supported by the NIH grant R01-GM087218-01
1 2 8 9 7 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Database searching by flexible protein structure alignment. Protein Sci. 2004 Jul;13(7):1841-50.