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Query: gi|30260200|ref|NP_842577.1| DNA gyrase subunit B (BA_0005) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEQKQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDILast
1 -3.720PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  41.SAAAQPSPWTARPFGDRLVGWDTYRRLDLLPYLSADTQSLQLSSFDRSGGDFDISTGNKNGTGGCLAPGGAGCVIAEHGAGEVDSI---DGQTVLDTPVQSLVDGQLGAPFVWPLVESPGGDYIKVPMPYRRSMRISVESHLEYYHVDYRQFPTAEGVSTFSPADPAVDVLDRFRAAGTVDPKPAAPG---EVHSNRVIELPGGAEQTIAESTGPASISALRLY---------------------------------------LPAPADQSLTGLRLRIEFDG-------RTTVDSPLGEFFGAGLGPTPVRSLMFAAFPQPDGSMALWCWWPMP-FARSARVSLANTGAGPVFGIAAEVTTTPDARWAGALASGRAGYFTARSHAGADEQGRGKFVGVSQTIRGQRTRTAFSDNAPYFLEGAERVYTDGAASPQWYGTGTEDLYEG-DPLNGQPDQRTATAGCADYCVAVYR-------------MPAEAIGYHSALRFG-GKRNMVEPDYSSTAFLYTQPDAELTGTDDVNPTDPL..................................................................................................... 559
2 -2.920PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  11  5................................................................................................................................................................................................................................................................................................................................................................................................................................DSRHSKYVIRIICEGEKTEPLFFTSLCDKLLD----DRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKKLNEGVDEAWAVFDKDEHPARKDAF----------------------EEAEKLIDDKKVNIAFSSRSFEYYL----------LLHFEYLHPFHATECGERIDG................................................ 171
3 -2.500HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  12  17.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................KQNQEKAWQVIKNTNIIQIWEDAGAKIN----VGSLRTGLLMKHRDIDFH-IYSSPLNLTDSFQAMARLAENPSIIECANLLHTAEACIEWHAWYQNEENELWIREGSRYDGYFEKVAQRISEIMTDEIRETILRLKYETPETEKIIGVEYYQAVIRDGV-RDYSGFKEWRKQH......... 193
4 -2.480HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;  ali follow..  2.........DEKEVSEMQEEMMTVLVVEPMKAPYVKHIPNELEDLQQAVGGDIEMTYP-FDDEVGILLNGNGKF------EGLPLNR-YDDHGQVYDAIAGTFLVVGLTEDDFTSLT--------EQIEKFKEKYQ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 115
5 -2.310PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  10  5..............................................................................................................................................................................................................................................................................................................................................................................................................................................................DGSFPPVGRSIAYRCGAFQLLAQMALRRELPEGVAPAQVRGALTAVIRRTLGAPGTFDNDTGNDGAGWLRIGLAGHQPGLGETGSLYLCTTAFLPLGLPASDDFWSQPDA.................................................................................... 118
6 -2.270PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  12  67....................................................................................................................................................................................................................................................................................RIIKAGSSPIQHDIMLLGALTALGACMSRH------RCLYGGKYHHPSLQCFV---------SASGKGILSYIRL-------LVEPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERTKKE--------------------APQMPPNRMFLISGNNTGTGILQN------------------IMDSDGTGLICEAEADTLSTAIGSDHGHWSDTLRKAFDHDRLSYNRRTDQEEVKKSYLSVLISGTPSQVEDGSYSRQLYYYMCGISKWISQFMDNEIDWEEIFTAMGLEWKEKLSVIKTHGIHTTDEQKEEIDTVFSDLFERSSVANGREMYSFVARL........................ 362
7 -2.250PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;  ali follow..  45................................................................................................................................................................................................................................................................................................................................................................................................EGELNPDMKAKIAELGKTDPKAAQELYRSVSYHVDHGNGLDCYKV-GPTLGGGTTALMAG---------DTIVYPYCYATQEILDNGPLRFTVKLVYNPLVVKGDSTIIETRIITLDA-----GSYCNKTVVSYTNLKETMPLAVGIVLHEPDGAIVADAANGYMTYVDPTDNAGGDNGKIF-VGAAFPTLVKEAKAPEKEKKELRGGADGHVLAISEYEPGADFTYYWGAAWSKAIKDSAAWNAYMADFAQKVR. 287
8 -2.190PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;  ali follow..  13  12......................................................................................................................................................................................................................................................................................................................................................................................................................................................................RSMEISEENLVTIEKYSLFQHLIDSNGI---DEAVLEKLKLNIRSLIASQEEDSKDLLDLCIDVIYH....................................................................................................................... 76
9 -2.100HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  16  2..............................................DMTDNNDDVLVKKFF--------SENRIDVPDDGRRLPDRTRRISRLWTAVCVVIGLLI--------FFRNKGFSVLVSCFDGIFSD........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 78
10 -2.090PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]  ali follow..  44LTFHHPDNKRERRVVMSVLKVIQKIHEIPEASVENI---GETDFIVTYEEQDGKGGVIHVAKIVMVVM-------ISFFGAAFSTAFNNDVGVTKMFGQIYELLTGTKSNGFTILEFMYCIGIIIGILTFFNHFGKKRLSVDPTPMEVEMRLYENDIQTTLVETYSRKEKELDV.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 209

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 6 5 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.