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Query: gi|30260206|ref|NP_842583.1| seryl-tRNA synthetase (BA_0012) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLDIKFLRTNFEEVKAKLQHRGEDLTDFGRFEELDTRRRELLVQTEELKSKRNEVSQQISVLKREKKDAEALILEMREVGEKVKDLDNELRTVEEDLERLMLSIPNIPHESAPVGETEDDNVVARTWGEVKEFAFEPKPHWDLATDLGILDFERAGKVTGSRFVFYKGAGARLERALISFMLDLHTDEHGYEEVLPPYMVNRASMTGTGQLPKFEEDAFRIESEDYFLIPTAEVPVTNMHRDEILNKEQLPIRYAAFSSCFRSEAGSAGRDTRGLIRQHQFNKVELVKFVKPEDSYEELEKLTNDAERVLQLLELPYRVMSMCTGDLGFTAAKKYDIEVWIPSYGTYREISSCSNFEAFQARRANIRFRREPNGKPEHVHTLNGSGLAIGRTVAAILENYQQEDGTIIIPEVLRPYMGGKTVIKLast
1 -3.320PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  10  1..........................................................................................................................................................................................................................MKIERLFIYCLLAGTSLLASCNSEDMLSEGMYPLTFTA-EVVATPQTRVSDYDDTDGKHKSKWDGGEVIGVKIGTDGAVGSYTLDSDGKPTTSTSNIPA------------QSTASQTVYGWYPNTAD--SLTGQDNTGNKFPYVLSKQYSYKENVQLNLEHQLYGTVIPQGDKTYLATRKVGDYYTAMLAPDTK........... 227
2 -2.870PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  12  1....................................................................................................................................................................................................................................................................FYIDKGGPEAHFKRYIEHVKGKKTGLFITLGADPAGEHGESMLKVGRELLNEGGNEILAEFICQGAIDPKVIEEMEMAAKMGDKATWKQASTHPDENDLKNARKAFE......................................................... 119
3 -2.780HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  12  3.......................................................................................................................................................................................................................................VDTKLINLKLWGYITMKKM------IAYC-------------GLD--------KCDAYIATINDNQELRKKTAKLWAELNNAPILPEHINCQGCRVDGIKTVFCDNMCGIRQCALEKGVATCGDCLDLER-----TVGEILENNPSALKNLKG........................................ 127
4 -2.410HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;  ali follow..  22  12............................................................................................................................................................................................................................................PLMFFDRAVNAQRLTVMADAVSECRTAADQAAELNETGQVGLLRLAEVWSAIRAKEGMGGLILE-LSDVVAQFYAYLELHYMMSSLMLGE.................................................................................................. 124
5 -2.340HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  20  3....................................................................................................................................................................................................................................................................................................................YLHARGLFHVLLLICNRELLLIGKRK-DEDDMAKSTKTYKEQESIEATKKLIAQRKELEKRKKAEESKKRTHRL----CQIGGAVESVLGCPIEEEDLPKLIGFLKR......... 113
6 -2.260PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;  ali follow..  10  2................................................................................................................................................................HKIKQMIKYIATLLLTVLFVACNNGKGQQ--PSEENEDPKAKEILQGIWLDDETETPLMRIIGDTIYYSDAQSAPVYFKILKDTLVTHYQIDKQSEYSFWFHSLADNIIKLHKSEDPNDTLAFSFKSVEIIPTYTEVT------KKDSVVMFDGVRYRAYVYINPSQMKVVKTTYSEDG-ISMDNIYYD-----NVMHICVYEGKKSLYAKDITKQMFVDVIPTDFLQQAILSDMNFIGIDRKG-LVCIPES............ 249
7 -2.220PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  54.............................................................................................................................................WSLGRNARLLMVIPMDAETPGGRLLRPQAQVMEEAIRHWATVLSVRLD---LDAARGKLGPEACEMERQRFDGVIAMMERNDGPTLVVTDSQAVVHPWTLDRSSGRPLVPITTFSIAMAYQQNGGRLDPFVEGLEALETLQDGDRVLISEA-----NHNRITSACNDI--MVQIPNKLEAALGGKLQIEHAFGREFELESGGMDGLKLAIHCGGC---MIDAQKMQQRMKDLHEAGVPVTNYGVFFS-----------WAAWPD--ALRRALEPW........ 308
8 -2.150PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  120............................................................................................................................................................................YNDLIIHVKNTASNHAYQHPTETWQTIEIQPIALGSTKTIKLG---CILSDGSTHMISDDVRTDLFGGRQGFINTVNDNDPIRYKLASTNIKNYAMPKKEK------SAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKENMPYGLAVSNGNGTFSYPQEKNSLFETYPGFSDWIN-GKVSSIGSFQKELVYKYCSGGIIGEDGKSHKI.......................................... 320
9 -1.830PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;  ali follow..  11  44............................................................................................................................................................................................................................................YGVGYTNVFDTYLSPQEYKGIEFRISRETMRMTTLGDGNVSVQNFFQANLAYTHNRVDNNNTFAGLVNWNYGLHYQFRITDNFKLLAGGMGDFNGGFVYNLR---PASARAYINLDASGMAIWHNYPLALRYQ....................................................... 181
10 -1.790PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)  ali follow..  13  6...........................................................................................................................................................................................................................................................................................................GELLDEAVDFCRKRGLEFYAVN--EADMSALRSRKVSADMYIDDRNDWGVIYEMVHNRWSYNRYLNEIHDFERSQKVSWWKRLINK....................................... 100

FFAS is supported by the NIH grant R01-GM087218-01
1 2 8 9 7 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Database searching by flexible protein structure alignment. Protein Sci. 2004 Jul;13(7):1841-50.