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Query: gi|30260212|ref|NP_842589.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein (BA_0018) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MERDQDIYFMQLAIEEAKKAEAIQEVPIGAVIVLNGEVISAAHNLRETEQRSIAHAELLAIDEACKKLGTWRLEDATLYVTLEPCPMCAGGIVLSRVKRVVYGAGDPKGGCAGTLMNLLTDERFNHQCEVVAGVLEEECGTLLTNFFRELRKKRKAIKKLEKSNENLast
1 -3.950PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;  ali follow..  1.........................MDIGPCSIPTGEFLVSKYEKEYFQKIPTGEFRTEICVVKASDGDCDRYAAVRLKFNDNEISYFEEAMKGIEDLKDINEGDFFGFNVDAGLACICDKKLHDLYCEFDEKFVKEN............................ 121
2 -2.980HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  15  3.....................................................................................................................................MTDNNDDVLVKKFFSENRIDVPDDGFSRRVMRR 35
3 -2.940PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;  ali follow..  37....................................................................................STQYNDLFSYARLERCHFGEDKPACKHCPIHCYQPARREAIKAIMRWSGMLLRHPILAIRHLIDDHRPVPDYPKRETSAKTS 122
4 -2.880HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  13  86.......................................................................GIRQCALEKGVATCGDCLDLERCPTVGEI.................................................................. 114
5 -2.800PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]  ali follow..  62..TQSDLNELVTGLSQSQSLSVPSWIDTTMLALGAGRMIWYTPACQRAMF-MQGALYVYAYKGSGRPDKETKLYQAPFFNVWSQGKVCTGNAAMPVGDNA---------AIPHMWVDAFFGSNFTH--PNFKEKDRLVKGVCPIDFWKAMTEKPLPV......... 230
6 -2.670PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  10  95..........AGDIYNYERPSQLTQWPVQIKLAPVNAPYFDGAKLLIAAD-ASFHEKFIKSEKLTEIIRRNDIQSVTIVRMEVPC--CGGLEMAAK...................................................................... 199
7 -2.550PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  11  332.HEVEEQQYKVRFEKIKDLEKTIDNYAF-IVPKQASDLLTEGKALSHCVGGSNGKTTIIFVRDKQDL---------KSLYTLE---YKNGQIYQLR------GKHNCD--------------------------PTKDVQMAANKWAKLLKSKTKVLQN....... 452
8 -2.330PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  80..........ANEYNALLNGDAADAAAVKAEQVKDSKTVESLGKELKASAPEYEGCVAENAQGLDAAAVKLNEQADWYETHEKSLSKAVRAVVESKAAKRLDDAKTNLTAKLDEASKLLADSD---------GKVADNA........................... 199
9 -2.130PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;  ali follow..  11  106........................AEFHQAIKIRFSEIKDLTEKNVIESTNAKEHSEI............................................................................................................ 154
10 -2.040PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  16.TQKNDLFYVCCLIEFIGRKTKNRRSII--------QKLGKKELIRQLDIAEANHCLSFE-QVSDEIIEYFNIQEGDFHTVESPSVQAIGKVYH----RLIISIISEQDNLVDVLFEVFNSFISDEISDFNSSVYYSNPEYLKYSYLEGR................ 157

FFAS is supported by the NIH grant R01-GM087218-01
1 2 8 9 7 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Database searching by flexible protein structure alignment. Protein Sci. 2004 Jul;13(7):1841-50.