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Query: gi|30260213|ref|NP_842590.1| DNA polymerase III subunits gamma and tau (BA_0019) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSYQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTGSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLEHMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLCQQFMMQANGADRLQAIMNRMQQLEKELEQVKKNGVPVGVQQEVKETRAAPKPVRTGSMKIPVGRVNEVLKQAKRQDLEQLKAVWGELLGRLKAYNKVAFAVLLENSEPVAASDDTYVLAFQYEIHCKMASENREAMDTVEQALFELLSKKLNMIAIPKSEWGKIREDFLKREGGSSEESPEKKEDPLIEEAIKLVGQELIEIKELast
1 -3.920HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  13  117..................................................................................................TQIAKYNTFLENITDCPMEESKKEQWSAEVKCLRAYFFLNLAFYYTDVP--------------MPLKTLSVDEANSISQTPQTEVYSQVEKDLKTAIDLLPVHYLRGIWRLPGGG............................................................................................................................................................................................................................................................................................................................................................. 217
2 -3.620PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;  ali follow..  13  24.DFVSLTRVYFQSVIAVNLGITNI-RFLPDVANFKRLFKVATQGGKLGLAKSASRKMLMQDYGISES------------------------EIDTSIKKNCRTQNDVQAYL-------MYQGFSSDLMMLMGNAIFKKALRSMTEKTVHDVCVWKADDVHKTAAAVRQYKERLGFSEQWMSEYVYNIVLLAKKEPKHKDEEA........................................................................................................................................................................................................................................................................................................................................................................ 209
3 -3.110HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  13  35.........YIATINDNQELRKKTAKLWAELNNAPILPEHINCQGCRVDGIKTVF---CGIRQCALEKGVATCGDCLRCPTVGE.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 113
4 -2.920PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  11  62...........PEFLQRIIKAGSALTALGACMSRGKYHHPSLQCAPSASGKGILIRLLVEPIH----------------DEIRKEVTIQMKAYKKEKAEYDAMGKERTKKEA--PQMPPNRMFLI-----SGNNTGTGILQNIMDSDGTG--LICEAEADTLSTAIGSD-KAFDHDRLSYN-------RRTDQEYREVKKSYLSVLISGTPSQVQTFIPTAED------------------GSYSRQLYYYMCGISKWISQFM---------DNEIDWEEIFTAMGLEWKEKLSVIKTHGIHTLQLTDEQKEEIDTVFSDLFERSSVANGREMYSFVARLAVNL--RIMSEVAVLR.............................................................................................................................................................................................................. 377
5 -2.750PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;  ali follow..  11  2.......THMARKPLGKYRQREIRTVGLMIALYEKRHPETDASTQYNDLFSYAIKRL-----RCHFGEDKPACKHCPICYQ--------------------ARREAIKAIMRWSGPRMLLRHPILAIRHLIDD------HRPVPDYPKRETSAKTSTGRTARLATQRATSADSDADKVKS.............................................................................................................................................................................................................................................................................................................................................................................................. 146
6 -2.100PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  20  14.......................LTMCSAFSLKKGHSKTVYAF-GIAASFTDTVVYF------------------------------TDIQILDSA----VSKEGFLTHRDLYS----QLKNYVEDNQNSTCMIYFSENRKKLEK--EATKILSKYKRNRNTTVTRIDT-DKFHFIKPE............................................................................................................................................................................................................................................................................................................................................................................................... 132
7 -1.990HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;  ali follow..  11  5...............................................................................TNVPDKKNYAIDEL-GLSAQAARNLYYLLESPRFLDLTYILEQY-FNDTVAAGYAAQNQLYTTISS----LTRKTVKTEAGEQAARDIA-HLRTSVYQADLVTIENQFMLAVKEVKKEIGNDFAAMQSMTAE-AAKRMFTEVAKGQDMTNPTITPEQVSDLI................................................................................................................................................................................................................................................................................................................................. 168
8 -1.970PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)  ali follow..  10  2...........................................................................................................NTQIKLSET-----VMVIDVAYL-----------------------------NFVINDLRKYFEPLLGRSLQTVDLALFTMYLAMDAGLKGSDNDVQVLLVYDKQSGKDGVAFKASLGEFSFMAAPSEGFVS-----RGDLYLDLLQIVLNAAEVKKLIVVPFNEEYGKEVENVLRECA.................................................................................................................................................................................................................................................................................... 154
9 -1.890HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;  ali follow..  17  21........................................................................................EMYQDDYYPAFLVDKVKDELQKVIDLLESGETDTEVIQETLDEAVCGINDLQEEFDENDS-------------------------EIETVARDCIGVTVAYILEWFGIPIDIEEA....................................................................................................................................................................................................................................................................................................................................................................... 110
10 -1.670PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  10  21................................................................................RTDDGLRLEILSPGWWNNEEGPDFKHAEFFLE--------------EIHVFASDTYDAVC--------HVVMCVKNFSGKVIPQITLSLYLEAEIETIDVGSYIGNKQVIPGYCNLE-QQWIGGFLDYAGDERILQKAKKYEKWIENKPERVLYEAIMESLGYKNNK---KPFLMLASLVTAETIQSFVPEYTPAQEKKIIAQSLLLGMAGLLPLNEEETKRFDDETIQYFDRIFSTWQGIKPKIHQTPLTRESWSYTGIRPANFPDRRIVAIANILSE........................................................................................................................................................................................................... 312

FFAS is supported by the NIH grant R01-GM087218-01
1 3 3 7 0 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.