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Query: gi|30260215|ref|NP_842592.1| recombination protein RecR (BA_0021) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MHYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLDMKEDDVLGFAKALVNAKRDLAYCSVCGHITDRDPCYICNDSHRDQSVVCVVQEPKDVIAMEKMKEYQGVYHVLRGAISPMGGIGPEDINIPQLLKRLHDETVQEVILATNPNIEGEATAMYISRLLKPTGIKVTRIAHGLPVGGDLEYADEVTLSKALEGRREVLast
1 -4.270PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;  ali follow..  11  2.....................THMARKPLGKYRQREIRTVGLMIALYEKRHPETDASTQYNDLEDKPACKHC-------PIHCYQPARRE--AIKAIMRWSGPRMLLRHPILAIRHLIDDHRPVPDYPKRETSAKTST............................................................ 123
2 -2.580PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  18  24............................................................................................................................TAMLGRIRADEPRKVWTPFVDLASRDAVDKTLQRLTKA---ALRRIDRGLKLTQKPNPPDPRSVIDAVGRRDQT 104
3 -2.500PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  12  18.......................................................................................................YICYSSIMGPINFEKAKKEREQAVIARLID--IRKAQQEYRSLHHGMYTEHFLIDFVKNQKLPFVM............................. 83
4 -2.330PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)  ali follow..  12  1.....................ENTQIKLSETVMVIDVAYLNFVINDLRKLGRSLQTVDLALFTMYLAMDAGLKGSDNDVQVLLVYDKQSGKLELDGVAFKASLGEFSFMAAPSEGFVSRGDLYLDLLQIVLNAAEVKKLIVVPFNEEYGKEVENVLRECALENA.................................. 158
5 -2.270HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;  ali follow..  16  7........................................................................SEMQEEMMTVLVVEPMKAPYVKHIPNELEDLQQAVGGDIEMTYPFDDE--------------------VGILLNGNGKFEGLPLNRALYDDHGQVYDAIAGTFLVVGLTEDDFTSLTPEQIEK... 109
6 -2.270HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  25  83......................................................NMCGICALEKGVATCGDCLD............................................................................................................................ 104
7 -2.160PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;  ali follow..  1....................................................................................MANLDVLFERLSRSSFRRRFRLGVQEQQYLANKGMETILEH------GKDFIAQRLAPAEIPNDGKQTP------CKGHPVFLAQHAHRIEAGKSLSQEEQAYILDVI...... 108
8 -2.080PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  12  1.........LIAPDGSFPPVGRSIAYRCGAFQLLAQMALRRELPEGVAPAQVRGALTAVIRRTLGAPGTFDNDTGNDGAGWLRIGLAGHQPGLGEVYISTGSLYLCTTAFLP...................................................................................... 103
9 -2.050PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  15  104.......NQLKDILETIIGVEDVSI------VVNVDATSLKIFEKNRKTQETSTNE-------TDKQGGKRTVSEMSSDEEIVIIKNGDKVVVQTKKPDIRGVLVVAQGVDNVQ------KKTIIEAVTRVLDVPSHRVAV......................................................... 222
10 -2.010PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;  ali follow..  10  4.....................................................................................................GPCSIPTGEFLVGD-VYLGSKYEKEYFQKIPTGEFRTEICVVKASDGDCDRYAAVRLKFNDNEISYFEEAFGFNVDAGLACICDKKLHDLYCEFDE. 115

FFAS is supported by the NIH grant R01-GM087218-01
1 2 8 9 7 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Database searching by flexible protein structure alignment. Protein Sci. 2004 Jul;13(7):1841-50.