current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|11497070|ref|NP_051181.1| hypothetical protein (BB_P20) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290
# Score Template Links and tools%idFirst MSIVFDSDFGILKRTIKDIVRAKREYLRVNYGINIDDNQSSIYNIIASSLALIEEEIINELNLFFSKMKPGGTYWAAIEEHISSKSTTYSAVRNALLNLDGIEYTNIKSAAGKANIYLILKETLLDTSKSNINSPEFKAKLWETLYLTTPSGTLLEGDIEIDGLNSTGQRKSYKISLGKRKYVYMKVKYKLDLKNYLYLNIDSQIRDIYSRIISNNYSDMGISFEYQDFFAPVNEVKGIKFMEISACIKDTDTESITKIGDSDFKKNQDIAINDDTMLLFNMTDRLLIDIGLast
1 -16.800[S] COG3299 Uncharacterized homolog of phage Mu protein gp47  ali follow..  12  4................................................................GTDAESDESLLARYEERLRRAGGNQYDFRNWCLEVPGVVDAFIYPLRRGNGF------DAVILGENGIPSAETLAAVQAHVDAVRPVTRKN----------------GFLALAPSIQTVNVAVTITLSSGTDT-DTATAAIKSAVNAYF--DALKPGDPLIKSQLETLISEVYGVR--DRVLTTPVGNIKPQESAEDIYWLRPGSINVEYTT............... 191
2 -13.400[R] COG3948 Phage-related baseplate assembly protein  ali follow..  98....................................................LMLDAGDPSKGIAPTMESDAAFRRRIVLAPESVAGPEGAYIYHAISAHAVRDVSATSPT---------PGDVIITVLSRSANGQPSQDVLDAV------------MAAVNQESVRPMTDHVTVQPAQITDYQVHARLHTYAGPD-AAVVLSEAQRRITAYTTDAF-RLGRDIAISGLYAGL-HVEGIQRVEL------LTPQQGLTMDRTQAARCTNITVV.................. 291
3 -5.130[R] COG0637 Predicted phosphatase/phosphohexomutase  ali follow..  14  6.AVFFDCD-GTLVDS-EVICSRAYVTMFRQFGITLELT-EVFRRFKGVKLYEIIDTISKEHGVALAKAELEPVYRAEVARLFDTELEAIAGANTLLESIK--TPMCVVSNGPVSKMQHSLGKLGMLHHFPDLLFSGYDIQRWK-LMLHAANAMKVNVEKCILVDDS............................................................................................................................. 168
4 -5.050[R] COG0546 Predicted phosphatases  ali follow..  14  10.AVAFDLD-GTLCDSVPDLAAAAEAMLE-----QLGMKPLPAKVVESYVGDGIGKLVHRVLTNDRDREADSESYMKYYRDHLSVFTRPYPETEAGLALLKS-IPLAVITNKNEILAAELLKQLGLADYFSLILGGDSPLPLRHAALGIDVANMVMVGDSRNDIIAAKA........................................................................................................................... 187
5 -4.770[R] COG4492 ACT domain-containing protein  ali follow..  14  56..............KYRETIFPVDDKMLDHREFTLILYVTDIVGMLARVLDVISKLELS-VLTIHQSIPMEEKATITLSLNAKSKETSVEDVIGALRNLDYVSKVELISMS.................................................................................................................................................................................... 151
6 -4.560[S] COG4737 Uncharacterized protein conserved in bacteria  ali follow..  19........................................................................................................................................NDSELLEAVERADNGLIDADLGIARQGQGRSGGYRSLILFKQADKAFFVYA-FAKNDRENISDKELDVYRKAAAYYLKYTRAELAALKEDGIIT............................................................. 118
7 -4.470[S] COG4104 Uncharacterized conserved protein  ali follow..  14  117...................................................................................................................................LIDHETGKPVAGRRVRVWSSG----GWNAFDTTDADGMTSWIERPTAEILYIDL.......................................................................................................... 166
8 -4.340[S] COG5515 Uncharacterized conserved small protein  ali follow..  13  6...................................................................................................................................FITGPDDSAFCHRVTAALNKGWQLYGSPTYAFNAATG........................................................................................................................... 42
9 -4.290[O] COG0691 tmRNA-binding protein  ali follow..  22................................................................................................................................................IEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKNGEMYLNNMHIAPYEEGNRFNHDPLRSRKLLIFKLGEQTREIGYSIVPLKLYLK----HGHCKVLLGVARGKKKYDKRQALKEKAVKRDVARDMK.................. 151
10 -4.220[S] COG5294 Uncharacterized protein conserved in bacteria  ali follow..  14  56...............................................................................................................................................................TLPAYDENGKETEVTFSADKELRAYLKLYIKEDPEKEVPAKAAEKLK..................................................................................... 113

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 0 8 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.