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Query: gi|11497093|ref|NP_051165.1| hypothetical protein (BB_P04) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MALKGNMQVENLEAVEDPQVDLGAQVSAAPRAKRQARQAEDVQGEDPYLESISELDDVLLKFKKYSKSMSSIENKVFSSSSGCFKSKNERVDAYSFACSSYTDKIEEYLYDPANSFPYKRGVKLVPKENSIYVEVGADTDMYGICVDVCEFSCTAYVLPITNNFEGYLVTRNPSIKIGEILDINNNGVIIKAGGGPPTAINIYALSDSFTINFAPEDGNQDQNRYPRQEYSINLIKVAIFGNRGLEKTVNPDGGLast
1 -6.660[S] COG3692 Uncharacterized protein conserved in bacteria  ali follow..  48...............................................................................................................................................VVLNGKINGNAFIVVPLSTTRDHDKLKRGMHVEIASNVINDLQFFDQQIRWAKTDLVQQVSRN-----RLNRARTYRGYLNQCLPHELVADIQRAVIKSINAISLIN.... 149
2 -6.280[S] COG4765 Uncharacterized protein conserved in bacteria  ali follow..  14  54..........................................................................................................................KITGRITTFDVYINETVQFGALQVTPDEAPRTDAFVTVDEIFTGWMFADSPGLNAVEHPIYD...................................................................... 132
3 -5.980[R] KOG4591 Uncharacterized conserved protein, contains BTB/POZ domain  ali follow..  10  1MGSNKEPKIDYLDILKEQFNALQSEHLELRRKYELECSPSRLLSLTSSLLEKPRFSDVTFKFAGNSLKSVPAHKYVLAARTDFWK---FENGGDEKSEIQISDDVDFEAFHVAIRWIYTDEIDLKMEDEKL-LKVCETATSFRLCIKIYEFAEKQSLRQLSTVAGSMIAGAWPKLGPAHFAQMTAALLYRLIDGNTKNVLHSIV-EDVLFLYFMQNSAKIPKILNDLDPQGASALEIALCSERKCALLGF.... 275
4 -5.610[T] COG3452 Predicted periplasmic ligand-binding sensor domain  ali follow..  45..............................QVQERLKQVLTNRLTNIHEQIENQLNIHVRQLEQMAGSPTGTEQTDWRLDARAQAEGFDGYQTIQWVDPKFVVR----WVEPLPDDEHDIDYANQYPHQIQSLELAARQKNTILSGVVD--KGFLVYVPLGDRFDGFVVG----FQLDQFIGSVRPLSGNKPDQDSGLRSFGLRIFEGNQLIYNDVPDDWEQDIVVTQELAWANSLPQAAMTSRWQLQLVPGPI 271
5 -5.590[P] COG1276 Putative copper export protein  ali follow..  11  187...................................................................................................................................................LMRFSWCGHGVLASGVLNALLITGFPPT--------TYWGQLLLLKAILVMIMVVIALANRYVLVPRMRQDEDRAAPWFVWMTKLEWIGAVVLVIISLLATLEP... 289
6 -5.540[S] COG3506 Uncharacterized conserved protein  ali follow..  14..........................................................................................................................HHAIDGDAVRVRTGKETDFWR---GFWRDNGHFLHRPVEGDFT------EVTVKGDYKVLYDQAGLMVRLSETHWIKAGIEYTDGLAYFSVVVTNDTSDWSLVAHASPDGVGIRLTRHGEAIRVQYLDASD. 141
7 -5.060[H] COG0307 Riboflavin synthase alpha chain  ali follow..  17  36....................................................................................................................................LETGASVAHNGCCLTVTEINGNQISFDLMKE-VGDEVNVERAAKFSDEIHIITTAEIAKILTSENNHQVWFKVQDASLMKYILYKGF---GEVTPTRFCVHLIERTTLGRKKLGERVNIE.. 183
8 -5.060[O] KOG0420 Ubiquitin-protein ligase  ali follow..  1MIGLFKVKEKQREQAQNATRGGASVKKQSAGELRLHKDISELNLPSSCSISFPNGKDDLMNFEVSIKPD------------------------------------DGYYQLISPVYPHE--VKCKTKVYHPNIDLEGN-----VCLNIEDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNVRRAMTGGYVGQT.............................................. 170
9 -5.040[O] KOG0418 Ubiquitin-protein ligase  ali follow..  11  64.................................................................................................................DQYPFS--VKFSTKIWHPNVSSQTGV----ICLDIDQWAASLTLRTVLLSIQALMCTPEPKDPQDAVVAKQYMEKPAVFKATAEYWTTKFAKGAVKNAGYQALVDKLKDMGVREEEAVSVLSCNNWDINRSTVYIFS.... 199
10 -4.950[O] KOG0421 Ubiquitin-protein ligase  ali follow..  12  1.....................MATVNGYTGNTPAATTPAATGSKQSAPPTKTVDSHSVLKRLQSELMGLMMGADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFK--VKFETCCFHPNVDLYGN-----ICLDIDKWSSAYDVRTILLSIQSLLGEPNIS................................................................................ 151

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 0 8 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.