current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|11497096|ref|NP_051173.1| hypothetical protein (BB_P12) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst MQFYDLREVYFSIGGTQLHSGKLELTSEPTTRAVISSEDKGMPVISLRDPKTITYVFNIEVTLGSHDYILLTELSDEQFYNMDVRKEDKMLDLAFNDRIATKIISNYAIFTEEPSRSYSAEAEKVSFEIRAINCQKSKPNNSLast
1 -6.070[S] COG3358 Uncharacterized conserved protein  ali follow..  13  166.........YWPSDPEWRISARYLPNKAGATLSIFNILGHTYRLQAIRAAGQALFVMFADRTSGHGSY------PAGRFLEVDAPDKQGSVVLDFN-----RAYNPPCAFTLFTTCLLPPSENRLNLAVTA........... 293
2 -5.400[S] COG5436 Predicted integral membrane protein  ali follow..  14  44.....................RLSMASDLYRMNRLDAEAGGAPVVKSVDPLFYATACRFDLEEGM---VRIKAPGNVPFWSVSVYDRNGHNIYSFNDHTATGGKLDAVVLTPAQMIDVRKDLPEGLQGAIFVEAPIDE.... 157
3 -5.390[R] KOG3037 Cell membrane glycoprotein  ali follow..  15  5................TFKAGKLRR--VPGTKLLRADPEKGYIVMNRDAYGLIHFQWAKRNDLENPEDDIIVFSSECTFEKVTECTTGRAYMLKYPSS------HSLFYWMQEASDDNDTS..................... 102
4 -5.280[R] KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily)  ali follow..  83....GLFATWLGHATVLVDLEGVKFVTDPVWADRASFTSFAGPKRYRPPPMKLEDLPDLDFAVVSHDADAVKRITNLKNQGIGADGSNTVTELNWGESSEFVKNGKTITIWCLPAQHSGQRG.................... 222
5 -5.220[S] COG1991 Uncharacterized conserved protein  ali follow..  21  23MLIYSLNNVTFTRG-----------PSVDLLATQINIEEKSLANA----SNTISQVYSQGPGGKATTYITLTYLRNEGNIEKAFKISNPVILVFYSNGTYVAIVDE.................................... 114
6 -4.960[S] COG3787 Uncharacterized protein conserved in bacteria  ali follow..  10  17................................VTWCVQQEGELWCA-----NAFYLFDAQ---------------KVAFYILTEEKTRHAQMSGPQAAVAGTVNGQPKTVALIRGVQFKGEIRRLE................ 90
7 -4.860[O] KOG1635 Peptide methionine sulfoxide reductase  ali follow..  17  29..FWSVELAYQRVPGVQTEVGYSQ-THDPSYKDVCSGTTNHAEIVRVQDPKECSYQSLLDLFWSKHDPTTLNRQGNDVYFYNPEQEK-ERHQQQVDRKVVTEILPAKKFYAEEHHQQYLSKGGR.................. 167
8 -4.850[J] KOG0650 WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis  ali follow..  14  168MHWYEYKHIGYDWDAKKI----IKPPQGDQIDEFLRKIEDPDFWRTVKDPLT-----GQDVRLTDEDIALIKRIVSGRIPNKDHEEYEPWIEWFTSEVEKMPIKN-----VPDHKRSFVSEKKRVSRMVHALKMGWMKTTE. 298
9 -4.770[G] COG1803 Methylglyoxal synthase  ali follow..  1.................MELTTRTIAARKHIALVSHDHCKKSLLAWVMENRDLLAQHELYATGTTGNLVQ-TGIDVHCLLSGPMGGDQEVGALISEKKI------DILIFFWDPLNAVPHDPDVKALLRLATVWNI...... 114
10 -4.660[J] COG1631 Ribosomal protein L44E  ali follow..  1..........................................................MKIPKRFRTY--CPFCKTHNEVVVERVKKGQASSMTHIARQKKRQEGIGNSGKFSKVPGGDKPTKRIWLRYRCTVCKKAH.... 78

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 1 4 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.